PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F01347.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 212aa MW: 21688.5 Da PI: 8.1912 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.6 | 4.7e-21 | 27 | 77 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 + +GVr ++ +gr++AeIrd + r +r++lg+f+t+eeAa+a++aa+++l+g+ Pahal.F01347.1 27 RLRGVRKRP-WGRYAAEIRDpV-----RkARVWLGTFDTPEEAARAYDAAARRLRGP 77 679******.**********44.....55**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.07E-18 | 26 | 86 | No hit | No description |
Pfam | PF00847 | 1.6E-14 | 26 | 76 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.512 | 27 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-21 | 27 | 85 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.8E-32 | 27 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-10 | 28 | 39 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.2E-30 | 29 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-10 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MAPKRSSSPA GSNGSAMCAP AAAEQPRLRG VRKRPWGRYA AEIRDPVRKA RVWLGTFDTP 60 EEAARAYDAA ARRLRGPRAA TNYPAQDPKA AEAAAAPAAS GSAVLSEDAS SSSSSCRDSP 120 LAVTVAVAAP QSQDLSLALP AMVAAQPYQL FLDPTAMVAV APALLQFLPP KSEEEQSFPG 180 SSSSSSVVFD AAPALGLGLD LNLAPPAGMV M* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-21 | 22 | 86 | 9 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM493723 | 5e-84 | AM493723.1 Saccharum officinarum mRNA for ethylene responsive transcription factor (ERF3 gene). | |||
GenBank | EU970153 | 5e-84 | EU970153.1 Zea mays clone 340982 ethylene-responsive transcription factor 4 mRNA, complete cds. | |||
GenBank | EU975388 | 5e-84 | EU975388.1 Zea mays clone 489369 ethylene-responsive transcription factor 4 mRNA, complete cds. | |||
GenBank | KJ727706 | 5e-84 | KJ727706.1 Zea mays clone pUT5645 AP2-EREBP transcription factor (EREB209) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821472.1 | 1e-145 | ethylene-responsive transcription factor ERF098-like | ||||
TrEMBL | A0A2T7D4Q3 | 1e-102 | A0A2T7D4Q3_9POAL; Uncharacterized protein | ||||
STRING | Si014474m | 3e-68 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14446 | 10 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 6e-19 | ERF domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F01347.1 |