PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01193.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 407aa    MW: 41756.2 Da    PI: 7.7847
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01193.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.23.9e-052993361254
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     R +++ +++  L++l+ +      +K + a++L +++eYIk L
  Pahal.F01193.2 299 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 336
                     677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.992287336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-9297358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.11E-5297340No hitNo description
SuperFamilySSF474598.24E-12297357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0089298342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MADHQEMIHP AAAAAAGGAS HGGDWWSTAV SCSPDQPPGF GAGLSPAGAA DGSNRSRSGN  60
AASSESPGSN SLATGGSSIT FQEPAGVADP GAVVVPQTAT GLAAAWNQPY YLDGSGFHGY  120
MSSSRGDQVH LGLRSPSSNN NSLMLQDPHD PNHQFLSNLG LELLSSPTSP SGGFRSSSLL  180
RSLTEPSAAA TKPSLGFQQY QQQTMNQAPS SIREALQFTN STPFWNPSSG FAAAAAAEGA  240
ASLGTAAGPP SGQSKSRPSA LEGAGDSSSI ITKKANADPT PLKKARTGTP SPLPTFKVRK  300
EKLGDRITAL QQLVSPFGKT DTASVLHETI EYIKFLHQQV GSLSAPYLKN RQQVPHLKVS  360
RDGGEAAAAK GDLTGRGLCL VPISSTFAVA SETPVDFWSP FGAAFR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821267.10.0transcription factor bHLH112-like isoform X2
TrEMBLA0A2S3I0S80.0A0A2S3I0S8_9POAL; Uncharacterized protein
STRINGPavir.Fa02016.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.13e-43bHLH family protein