PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F01193.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 413aa MW: 42297.8 Da PI: 8.2593

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F01193.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.2	4e-05	305	342	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +++eYIk L Pahal.F01193.1 305 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 342 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.992	293	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.13E-5	303	346	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.8E-9	303	364	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.37E-12	303	363	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0089	304	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MADHQEMIHP AAAAAAGGAS HGGDWWSTAV SCSPDQPPGF GAGLSPAGAA DGSNRSRSGN 60 AASSESPGSN SLATGGSSIT FQEPAGVADP GAVVVPQTAT GLAAAWNQPY YLDGSGFHGY 120 MSSSRGDQVH LGLRSPSSNN NSLMLQDPHD PNHQFLSNLG LELLSSPTSP SGGFRSSSLL 180 RSLTEPSAAA TKPSLGFQQY QQQTMNQAPS SIREALQFTN STPFWNPSSG FAAAAAAEGA 240 ASLGTAAGPP SGQSKSRPAS LAAKSALEGA GDSSSIITKK ANADPTPLKK ARTGTPSPLP 300 TFKVRKEKLG DRITALQQLV SPFGKTDTAS VLHETIEYIK FLHQQVGSLS APYLKNRQQV 360 PHLKVSRDGG EAAAAKGDLT GRGLCLVPIS STFAVASETP VDFWSPFGAA FR*

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MADHQEMIHP AAAAAAGGAS HGGDWWSTAV SCSPDQPPGF GAGLSPAGAA DGSNRSRSGN  60
AASSESPGSN SLATGGSSIT FQEPAGVADP GAVVVPQTAT GLAAAWNQPY YLDGSGFHGY  120
MSSSRGDQVH LGLRSPSSNN NSLMLQDPHD PNHQFLSNLG LELLSSPTSP SGGFRSSSLL  180
RSLTEPSAAA TKPSLGFQQY QQQTMNQAPS SIREALQFTN STPFWNPSSG FAAAAAAEGA  240
ASLGTAAGPP SGQSKSRPAS LAAKSALEGA GDSSSIITKK ANADPTPLKK ARTGTPSPLP  300
TFKVRKEKLG DRITALQQLV SPFGKTDTAS VLHETIEYIK FLHQQVGSLS APYLKNRQQV  360
PHLKVSRDGG EAAAAKGDLT GRGLCLVPIS STFAVASETP VDFWSPFGAA FR*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821266.1	0.0	transcription factor bHLH112-like isoform X1
TrEMBL	A0A2S3I0N2	0.0	A0A2S3I0N2_9POAL; Uncharacterized protein
STRING	Pavir.Fa02016.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2216	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.3	2e-42	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.F01193.1