PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01139.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 191aa    MW: 20457.6 Da    PI: 4.8096
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01139.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.7e-163887255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y GVr+++ +gr++AeIr p++   +kr +lg+f+taeeAa a++  + ++ g
  Pahal.F01139.1 38 EYLGVRRRP-WGRYAAEIRNPVT---KKRRWLGTFDTAEEAAVAYDLSAISISG 87
                    588******.**********654...5*******************99988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.08E-243795No hitNo description
SuperFamilySSF541719.81E-193796IPR016177DNA-binding domain
PROSITE profilePS5103220.9953896IPR001471AP2/ERF domain
SMARTSM003802.1E-2638102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-253895IPR001471AP2/ERF domain
PRINTSPR003675.8E-93950IPR001471AP2/ERF domain
PfamPF008472.8E-93984IPR001471AP2/ERF domain
PRINTSPR003675.8E-96177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MADAPVAHQV AAAAAMGAQD LEQQQQQQRR RRSRASSEYL GVRRRPWGRY AAEIRNPVTK  60
KRRWLGTFDT AEEAAVAYDL SAISISGPAA ARTNFYYPCG ADLELGAAGA ATALHSQQQP  120
PPPPYGPVQV APPPSPLAEG SGSTVDDYEW QQLSADEEVD DDESLTIAAI LQSFRHQTAP  180
SAPSAPLYLL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1537951371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14262RRRPWGRYAAEIRNPVTKKRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2417624e-75AK241762.1 Oryza sativa Japonica Group cDNA, clone: J065205D04, full insert sequence.
GenBankAP0051644e-75AP005164.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0054L03.
GenBankAP0149644e-75AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126164e-75CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820790.11e-134ethylene-responsive transcription factor LEP-like
TrEMBLA0A2S3I0J91e-133A0A2S3I0J9_9POAL; Uncharacterized protein
STRINGSi015237m4e-78(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.14e-28ERF family protein