PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01070.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 329aa    MW: 34600 Da    PI: 7.3333
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01070.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.82.2e-32163216255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     pr+rWt++LH+rFv+ave LGG+++AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Pahal.F01070.2 163 PRMRWTSTLHARFVHAVELLGGHDRATPKSVLELMDVKDLTLAHVKSHLQMYRT 216
                     9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-29160217IPR009057Homeodomain-like
SuperFamilySSF466898.06E-16161217IPR009057Homeodomain-like
TIGRFAMsTIGR015574.8E-24163216IPR006447Myb domain, plants
PfamPF002495.2E-7164215IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MELFPSQPDL SLQIGLPTSP TPHDHHHHAA ALSARFFAAA GGGGGNGVGN PAAMPPSLQL  60
PVPLPLPLPV QLPMPPSAAA AAGAAGLYYH PDAAVLRPIR GVPLYQHPHT HAVPPTFPPH  120
SAAPGPCFCE PCHVAAGAWR RAGCGAGARV AGFPPAKRAA RAPRMRWTST LHARFVHAVE  180
LLGGHDRATP KSVLELMDVK DLTLAHVKSH LQMYRTVKNT ERPAASSDQA DGFENGSAGE  240
ICDDNSLDLH GYGGGKPESA AAARHGREDW TGFPSESNTG SMHSLKEQMQ SKSLEILSDM  300
NSCVSETTSS TSELNLEFTL GRPQNRPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-16164218458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-16164218458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-16164218357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-16164218357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-16164218357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-16164218357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-16164218458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-16164218458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-16164218458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-16164218458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-16164218458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-16164218458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7268190.0KJ726819.1 Zea mays clone pUT3358 G2-like transcription factor (GLK55) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821360.10.0probable transcription factor KAN2 isoform X2
TrEMBLA0A2S3I0E30.0A0A2S3I0E3_9POAL; Uncharacterized protein
STRINGGRMZM2G123308_P021e-147(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.14e-37G2-like family protein