PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01055.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 315aa    MW: 32630.7 Da    PI: 9.728
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01055.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65e-07168209240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      g WT +E ell +   +++ g   +W++Ia+ +g +Rt++++
   Pahal.F01055.1 168 GEWTDQELELLRRQMVKHPAGepqRWEKIAAVFGGRRTPESV 209
                      78********************************99999987 PP
2Myb_DNA-binding23.31.5e-07256299243
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      g+W++ +d  l++a k+++++   +W+++a+ ++ g+t   c  r
   Pahal.F01055.1 256 GAWSAGDDRALLNALKEFPKDtamRWEKVAAAVP-GKTKAACMKR 299
                      79********************************.*******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.156162209IPR017877Myb-like domain
SMARTSM007170.015166219IPR001005SANT/Myb domain
SuperFamilySSF466891.64E-7168211IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-4168203IPR009057Homeodomain-like
PfamPF002491.0E-5168210IPR001005SANT/Myb domain
CDDcd001678.53E-6169211No hitNo description
PROSITE profilePS500906.934250304IPR017877Myb-like domain
SuperFamilySSF466891.2E-9254303IPR009057Homeodomain-like
SMARTSM007179.4E-7254306IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-5256303IPR009057Homeodomain-like
PfamPF002499.5E-7256299IPR001005SANT/Myb domain
CDDcd001675.73E-7257304No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEFVDPWDTQ SRARVVHSGA NSTSSPSSTT AGASPSLPHA ASCAAAAVAL LAAAYYLPPA  60
YQILSSLLVW VASSLLLAPF APSSATGGDF SVGRGRLLPA QEPAKEPVPE PAPAPRRARR  120
QNPAPAPAKP SDPVAAPVQP AASLQSLQKA AGAGGTVVDG GEREEDAGEW TDQELELLRR  180
QMVKHPAGEP QRWEKIAAVF GGRRTPESVI RAAKSGAAAA GGGSFEQFLR KRKPLDPRAE  240
AADAGDNAGG GESADGAWSA GDDRALLNAL KEFPKDTAMR WEKVAAAVPG KTKAACMKRV  300
TELKRDFRST KAAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228233LRKRKP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821088.10.0transcription factor MAMYB
TrEMBLA0A2S3I0D30.0A0A2S3I0D3_9POAL; Uncharacterized protein
STRINGPavir.Fa01887.1.p1e-164(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103112731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.17e-44MYB_related family protein