PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01044.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 684aa    MW: 75766.7 Da    PI: 4.5916
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01044.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.87.3e-5291421128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp GfrFhPtdeelv +yLk k++g+ + + evi+e+d++k+ePwdLp k  +++++ ew+fF+++d+ky++g+r+nrat++gyWkatgkd+ ++
  Pahal.F01044.1   9 LPLGFRFHPTDEELVRHYLKGKITGQINAEVEVIPEIDVCKCEPWDLPdKsLIRSDDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDRIIK 103
                     699***********************988889***************96446677888************************************* PP

             NAM  94 sk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     sk    k++ +g+kktLvf++grapkge+t W+mheyr 
  Pahal.F01044.1 104 SKgdkrKQHIIGMKKTLVFHRGRAPKGERTGWIMHEYRT 142
                     *987666666***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.81E-593163IPR003441NAC domain
PROSITE profilePS5100557.2989163IPR003441NAC domain
PfamPF023651.4E-2710141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MTVMELKALP LGFRFHPTDE ELVRHYLKGK ITGQINAEVE VIPEIDVCKC EPWDLPDKSL  60
IRSDDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR IIKSKGDKRK QHIIGMKKTL  120
VFHRGRAPKG ERTGWIMHEY RTTEPEFESG EQGGYVLYRL FRKQEEKPER PSPDEVDRSG  180
YSPTPSRSSP DNIEANEEAN TPLNRESPES GLHESPIELP KSVETHAMPM TRWLADRNDN  240
LVATAADVSH MPINRHANVP EVDPSAGASA QFVHPQNGNG GFNNFVPDIA PNLPHGNVFF  300
SDFQQGAFGF DGNMNPPDAL NAFLNQALVD PDEHSSTTSK VQYDSDIPTE FENHGVAQGE  360
DDQGWWANLD FLSDEPNPLN SAYENTPLLP YDTNDQDVLS VDSAADSLHE LFNNMEDSSA  420
RRVGMNIEYG LQGTGISLMP RQLQASVQPN YVLTNQGTAT RRLRLHWPAD FESGESITRD  480
ESEDEVSCIV TPNYLNETVE ESTADKDVVS DGDEAESTGI VIRSRPAPSS SSESSLTQGT  540
AVRRLRLQSH LKTGPCPSTD DASSCIINET ESHHKAEKSE IGENASTNFA ESVDGILDNC  600
GDSEQKNMPE HVAETVAVPE AKSVPRLRKA SEKSDKDAIK QEDGLEPHVR APAQKGGFQS  660
YIVWLVLSVP LLLLLCVGVY GWI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-46816419169NAC domain-containing protein 19
3swm_B2e-46816419169NAC domain-containing protein 19
3swm_C2e-46816419169NAC domain-containing protein 19
3swm_D2e-46816419169NAC domain-containing protein 19
3swp_A2e-46816419169NAC domain-containing protein 19
3swp_B2e-46816419169NAC domain-containing protein 19
3swp_C2e-46816419169NAC domain-containing protein 19
3swp_D2e-46816419169NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820792.10.0protein NTM1-like 9
TrEMBLA0A2S3I0D10.0A0A2S3I0D1_9POAL; Uncharacterized protein
STRINGPavir.Fb00405.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.21e-72NAC 014