PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00843.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 520aa    MW: 55032.6 Da    PI: 7.48
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00843.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.66.8e-18131220186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +Wt+  +  L++a++++ e+l+rg+l++ +We+v+ ++     ++   +s +qCk+k++nl+kryk + ++  +  ++++s++p+f+++e
  Pahal.F00843.1 131 EWTDGAISSLLDAYTDRFEQLNRGNLRGRDWEDVAGAVtdgqGKTTGGKSVEQCKNKIDNLKKRYKVECQRLASSGAGAVSHWPWFKKME 220
                     5*************************************7655444446899***************99999999989999*********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.7E-20129222No hitNo description
Gene3DG3DSA:3.40.1160.103.1E-70275512IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536337.85E-52277512IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.601277513IPR015963Uridylate kinase, bacteria
PfamPF006966.3E-18280492IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042541.46E-103280513No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MASCDDDFGL LGDDAHQPAA PPPQPATAAQ QPAPPPPPVQ AFCFADAAVA AGAGAGAGSF  60
SQAQEESNHH AERGKAAHHA KRARERPDEF SSDGGEYCSY INSGGSGGGG KKGRSGGASS  120
GASDYRKDRE EWTDGAISSL LDAYTDRFEQ LNRGNLRGRD WEDVAGAVTD GQGKTTGGKS  180
VEQCKNKIDN LKKRYKVECQ RLASSGAGAV SHWPWFKKME QIVGNSASPA SSKPLAVAED  240
EKPRQQQQQH GSKRYPLSST GPPTVVGSSR TNPLSNPRWK RVLLKIGGTA LAGAAPQNVD  300
PKIIMLIARE VQVACHHGVE VAIVVGGRNI FCGDNWVAST GTDRASTYPI GMMASVMNSV  360
LLQASLEKIG VETRVQTALT IQEVAEPYVR RRAIRHLEKG RVVIFGGIGA GIGNPLFTTD  420
TAAALRASEI NADVVLKGIV GDDEYGCPPR GNSNTPFEHI SFRELAARGF SRMDMTAVTC  480
CEENNIPVVI FNMLEPGNIS RAICGDQIGT LVDQSGRIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A3e-612715121239Uridylate kinase
3ek5_B3e-612715121239Uridylate kinase
3ek5_C3e-612715121239Uridylate kinase
3ek5_D3e-612715121239Uridylate kinase
3ek5_E3e-612715121239Uridylate kinase
3ek5_F3e-612715121239Uridylate kinase
3ek6_A3e-612715121239Uridylate kinase
3ek6_B3e-612715121239Uridylate kinase
3ek6_C3e-612715121239Uridylate kinase
3ek6_D3e-612715121239Uridylate kinase
3ek6_E3e-612715121239Uridylate kinase
3ek6_F3e-612715121239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0675670.0BT067567.1 Zea mays full-length cDNA clone ZM_BFc0089D23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823789.10.0uncharacterized protein LOC112899509 isoform X1
TrEMBLA0A2S3I6B50.0A0A2S3I6B5_9POAL; Uncharacterized protein
STRINGPavir.Gb01778.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-159Trihelix family protein