PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00824.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 416aa    MW: 44985.5 Da    PI: 6.0437
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00824.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-05241260120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  n++ H+
  Pahal.F00824.1 241 FSCPVCYKTFNRYNNMQMHM 260
                     89*****************9 PP
2zf-C2H212.50.00043327347323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C +Cgk F  k + ++H +++
  Pahal.F00824.1 327 CRKCGKAFAVKGDWRTHEKNC 347
                     *****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.67E-5237263No hitNo description
Gene3DG3DSA:3.30.160.607.5E-6241260IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.45241263IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743241268IPR007087Zinc finger, C2H2
PROSITE patternPS000280243263IPR007087Zinc finger, C2H2
SuperFamilySSF576673.58E-6309345No hitNo description
Gene3DG3DSA:3.30.160.603.4E-5312345IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035582325345IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.621325345IPR007087Zinc finger, C2H2
SMARTSM00355220351374IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MEDPYTSFFK NPYYYYTTSF PSAPAPHLPP PLPPYTSLYP AVAAAAPQYP ACFFQPQPTL  60
PPLHDSPPSP PLREALPLLS QSPTRGCASR PRHVAADYDS DDDGDDFLRE VVGSSATPSG  120
RAPLFADLNC MPSCCDDGDP MDVEAGASTD DAAVALRIGL PAAPANGCDG TEADLLSGLT  180
GRACGGMEPE EDEEECKVDT GAGDGDEAVP LGFASTPIGR LNKGQYWIPT PAQILIGPTQ  240
FSCPVCYKTF NRYNNMQMHM WGHGSQYRKG PESLRGVQPT AMLRLPCYCC APGCRNNIDH  300
PRARPLKDFR TLQTHYKRKH GLKPFLCRKC GKAFAVKGDW RTHEKNCGKL WYCLCGSEFK  360
HKRSLKDHAR AFGHGHGAFG CNVDGADGLE DEDEGAVSEI EQDCAAGATC RSSAR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821697.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-119ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2S3I4H60.0A0A2S3I4H6_9POAL; Uncharacterized protein
STRINGPavir.Fa00506.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-109C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]