PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00810.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 381aa    MW: 40540.4 Da    PI: 8.3673
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00810.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.7e-13309354655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR +i +++ +L+el+P+     +k  + +++L +Av+YIk+Lq
  Pahal.F00810.1 309 SIAERVRRTKISERIRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 354
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.945303353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-16306365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.61E-13307358No hitNo description
Gene3DG3DSA:4.10.280.101.0E-15308367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-10309354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-13309359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MYGSPVSKDL NLPVQPPMTS SGLLRYRSAP STLLGEVCED FLQPGPRAGS PEHGADNVFS  60
RFLADHQIRD KPPAPAPHAP AAAHFPDAAA MASQQQQMMF HSQQQQQQQQ QMAAVESGLY  120
RTVSSGMEAP TAGASSLIRQ SSSPAGFLNH LNMDNGYGGM LRAGMGVGFS NGASAAAAAD  180
STSGGGGGRL KGQLSFSSRQ GSLMSQISEM GSEELGGSSP EGAGGGRGYI PGYPMSSGWE  240
DSSSLMSENL SGMKRPRDPS EPGQSGLTQQ FSLPKTSSEM AAIEKFLQFQ DAVPCKIRAK  300
RGCATHPRSI AERVRRTKIS ERIRKLQELV PNMDKQTNTS DMLDLAVDYI KDLQQQVKVL  360
NESRASCTCS ASKQQRQFSC *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3546340.0AK354634.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009F18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821227.10.0transcription factor bHLH130-like
TrEMBLA0A2S3I3T20.0A0A2S3I3T2_9POAL; Uncharacterized protein
STRINGPavir.J14004.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-57bHLH family protein