PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F00769.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 189aa MW: 20058.7 Da PI: 11.7499 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33.9 | 7.8e-11 | 29 | 77 | 4 | 56 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +GVr + +g W++eIr+p + r+r ++g f t +Aa a++aa +++ge Pahal.F00769.1 29 TGVRARQ-WGGWAVEIRVPLS---RQRLWVGAFETDRQAALAYDAAIFCFYGE 77 59*9887.**********843...4**********99**********999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.32E-13 | 27 | 82 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.215 | 27 | 88 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.4E-14 | 27 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-5 | 28 | 39 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-20 | 28 | 89 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.13E-15 | 30 | 90 | No hit | No description |
Pfam | PF00847 | 5.2E-6 | 30 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-5 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MARKAAQAHS VGGQQPAAAA RQLKRSAWTG VRARQWGGWA VEIRVPLSRQ RLWVGAFETD 60 RQAALAYDAA IFCFYGEDLP RNRRFNFPAA PRPDIGEVVR ARLSVAAKDI ANRHARLSVA 120 AKDIANRHRQ QARSRPPAGP PCAAAETLQQ AAVAAGPSAG AGAPAAPAAG YHGRNPNGEV 180 ETTLRLCL* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822465.1 | 3e-89 | ethylene-responsive transcription factor ERF017-like | ||||
TrEMBL | A0A2T8IHP2 | 1e-85 | A0A2T8IHP2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fa00469.1.p | 4e-63 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5444 | 25 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 4e-18 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F00769.1 |