PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F00713.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | SBP | ||||||||
Protein Properties | Length: 396aa MW: 40763.9 Da PI: 8.8108 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.3 | 3.3e-41 | 85 | 160 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC++dl+ ak+yh rhkvC +hskap v+v+g+eqrfCqqCsrfh+l+efD++krsCrrrL +hnerrr++ Pahal.F00713.1 85 RCQVEGCNVDLTGAKTYHCRHKVCAMHSKAPLVVVNGIEQRFCQQCSRFHQLHEFDQQKRSCRRRLTGHNERRRRP 160 6*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.3E-34 | 79 | 147 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.368 | 83 | 160 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 9.81E-40 | 84 | 163 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.9E-32 | 86 | 159 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MEAASAGGGS GGGGGDDHLH GLKFGKKIYF EDAGASGSGS GSSGGSASGA SEPPPPPSAS 60 PPRAAAGRRG RGAAGGAAGS SAPPRCQVEG CNVDLTGAKT YHCRHKVCAM HSKAPLVVVN 120 GIEQRFCQQC SRFHQLHEFD QQKRSCRRRL TGHNERRRRP PAGPLASRYG RLAASLGGEP 180 GRFRSFLLDF SYPRVPSSMR DGWQAVRPGE RVPGSIQWQA SLDPHHHSAT AGYGAHSYGS 240 QGSSSSGPPV FPGPELPPGG CLAGVPADSS CALSLLSTQP WDTTQSAGHS RTASMPATAG 300 FDGNPVAPSL MASSYIAPSP WTGSRGHAGG RNVTPQLPPE VPLDEVHSGS SSHHGQFSGE 360 LELALQGNRP APAPRIDQGS TSTFDQASNT SDWSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-31 | 76 | 159 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821402.1 | 0.0 | squamosa promoter-binding-like protein 14 | ||||
Swissprot | Q7EXZ2 | 1e-150 | SPL14_ORYSJ; Squamosa promoter-binding-like protein 14 | ||||
TrEMBL | A0A2S3I413 | 0.0 | A0A2S3I413_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7D9G9 | 0.0 | A0A2T7D9G9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fb01946.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2527 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 2e-40 | squamosa promoter binding protein-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F00713.1 |