PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F00692.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LBD | ||||||||
Protein Properties | Length: 200aa MW: 21357.1 Da PI: 8.0173 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 98 | 9.4e-31 | 33 | 131 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca+dCvlapyf a+qp+++a vh +FG+snv+k+l+ lp +er +a+++++ eA++r++dP +gvi +lqq+++ +k++la Pahal.F00692.1 33 RCAACKYLRRRCAPDCVLAPYFRASQPRRYADVHAVFGTSNVTKVLQGLPVQERGRAADTMATEARWRVQDPLL--HGVIDRLQQEIRAVKHKLA 125 6***********************************************************************96..899**************** PP DUF260 96 llkeel 101 +++++l Pahal.F00692.1 126 RTRAQL 131 999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.721 | 32 | 131 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.5E-30 | 33 | 128 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MSSSAGGNME EVVEHQQQLD YGGGGGGSNN PRRCAACKYL RRRCAPDCVL APYFRASQPR 60 RYADVHAVFG TSNVTKVLQG LPVQERGRAA DTMATEARWR VQDPLLHGVI DRLQQEIRAV 120 KHKLARTRAQ LAVHARGAPP PPPGTQQPML SLPPPPPQPL AAAAAAAVHA GAHGVAVHDG 180 DDEAPLMDPD EFLDLDGRF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-25 | 34 | 137 | 12 | 117 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-25 | 34 | 137 | 12 | 117 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022683529.1 | 4e-75 | LOB domain-containing protein 24 | ||||
TrEMBL | A0A2T8IHN7 | 1e-136 | A0A2T8IHN7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Cb01140.1.p | 1e-81 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5282 | 35 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 8e-34 | LOB domain-containing protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F00692.1 |