PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00494.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 277aa    MW: 29355.9 Da    PI: 5.4274
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00494.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.8e-10105150454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er RRd++  +f  Lr  +P+      ++++Ka+ L  A+ YI +L
  Pahal.F00494.1 105 SHMEAERHRRDKLHRRFCDLRAAVPNV-----TRMDKASLLADATAYIAEL 150
                     899***********************8.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.84101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.29E-8104155No hitNo description
SuperFamilySSF474591.31E-14104165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-14105162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-8105150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-9107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDEHGRPTSS TSSPPSPPSF FSAAGNGGLL EFPYTEVPEQ WLMDDDDDDS NIQEQLLSME  60
PCGGDGGSLS AGSADRSSRN PPAAAATRRG RKAGPSAGGG GPAVSHMEAE RHRRDKLHRR  120
FCDLRAAVPN VTRMDKASLL ADATAYIAEL RARVERLEAE ARWAAARKAN PFLVADDVAA  180
AASATKFELE EEEEKLEVRM VVGQEAAALR LTTTAARHAP ARLMDALRAL DLPVQHACAC  240
RVGGVTVQDA VVDVPAELRE AGCLRAALLH RLQGSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-15104160763Transcription factor MYC2
5gnj_B2e-15104160763Transcription factor MYC2
5gnj_E2e-15104160763Transcription factor MYC2
5gnj_F2e-15104160763Transcription factor MYC2
5gnj_G2e-15104160763Transcription factor MYC2
5gnj_I2e-15104160763Transcription factor MYC2
5gnj_M2e-15104160763Transcription factor MYC2
5gnj_N2e-15104160763Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821844.10.0transcription factor bHLH14-like
TrEMBLA0A2S3I4F60.0A0A2S3I4F6_9POAL; Uncharacterized protein
STRINGPavir.Fa00073.1.p1e-113(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.16e-14bHLH family protein