PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00493.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 272aa    MW: 29129.9 Da    PI: 6.8706
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00493.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.3e-12114159454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e Er+RRd++N  f eLr  +P+       +++Ka+ L  A  YI +L
  Pahal.F00493.1 114 THVEKERQRRDKLNRLFCELRGAVPNV-----SRMDKASLLADAATYITQL 159
                     799***********************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.16E-16108173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.354110159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.16E-11113164No hitNo description
Gene3DG3DSA:4.10.280.106.4E-14114171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9114159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MYTTGSGKTD ATLPQHVQRQ SAMDELVCAA SSGSSPSPAS FFSATGQHQE HEFVPCDVLE  60
GWLEDDDWMD GPRDGGDEGS RSPGNDLLSG EPPAPAPKRR GRKLGPRSNG PALTHVEKER  120
QRRDKLNRLF CELRGAVPNV SRMDKASLLA DAATYITQLR GRVKQLESEN GLAAAAAPVA  180
APYSVGVQEN LEVRMVGREA AALRLTTAAR HAPARFMLAL HALDLPVQHA CVCLVGGMTV  240
QDAVVDVPAA ALRDERALRA ALLYRLQQTG Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-16113169763Transcription factor MYC2
5gnj_B9e-16113169763Transcription factor MYC2
5gnj_E9e-16113169763Transcription factor MYC2
5gnj_F9e-16113169763Transcription factor MYC2
5gnj_G9e-16113169763Transcription factor MYC2
5gnj_I9e-16113169763Transcription factor MYC2
5gnj_M9e-16113169763Transcription factor MYC2
5gnj_N9e-16113169763Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822542.10.0transcription factor MYC3-like
TrEMBLA0A2T8II980.0A0A2T8II98_9POAL; Uncharacterized protein
STRINGPavir.Fa00117.1.p1e-133(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.12e-20bHLH family protein