PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00492.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 270aa    MW: 28553.1 Da    PI: 6.403
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00492.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.25.9e-13103148454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RRd++N +f eLr  +P+       +++Ka+ L  A  YI +L
  Pahal.F00492.1 103 SHVEAERQRRDKLNRRFCELRAAVPTV-----SRMDKASLLADAATYIAEL 148
                     799***********************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.2599148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-16102165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.65E-12103153No hitNo description
PfamPF000102.2E-10103148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16103162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDELVSSSSS LSTAPFFSTA AHLPQDLEFL SCHGLDQWTG ADDWLDEPLD LHGATWGDDG  60
SGGSASASAG NDDLSGEPPP PPAAPKRRRG RKPGPRTNGP PISHVEAERQ RRDKLNRRFC  120
ELRAAVPTVS RMDKASLLAD AATYIAELRD RVEQLEAEAK QASAVTIVAA TTPSFGSGGG  180
LGLGLGLEER LELRVVGRDA AALRLTSAAR HAPARLMDAL RSLDLPVQHA CVTRLGGVTV  240
QDAVVDVPAA LRDERGLRAA LLHKLQRSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-18101161666Transcription factor MYC2
5gnj_B1e-18101161666Transcription factor MYC2
5gnj_E1e-18101161666Transcription factor MYC2
5gnj_F1e-18101161666Transcription factor MYC2
5gnj_G1e-18101161666Transcription factor MYC2
5gnj_I1e-18101161666Transcription factor MYC2
5gnj_M1e-18101161666Transcription factor MYC2
5gnj_N1e-18101161666Transcription factor MYC2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039147e-53AP003914.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1521_G02.
GenBankAP0046327e-53AP004632.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0623F08.
GenBankAP0149647e-53AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821957.10.0transcription factor MYC2-like
RefseqXP_025821958.10.0transcription factor MYC2-like
TrEMBLA0A2S3I4H40.0A0A2S3I4H4_9POAL; Uncharacterized protein
STRINGSi015343m1e-117(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.14e-27bHLH family protein