PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00490.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 476aa    MW: 51143.1 Da    PI: 7.4083
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00490.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.59.3e-11324382563
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     kr +r   NR +A rs +RK  +i+eLe kv++L++e ++L  +l +l+  +a l +++
  Pahal.F00490.1 324 KRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSAQLTMLQRDSAGLATQN 382
                     899*********************************************99998887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.6E-18320384IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.852322385IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.44E-12324375No hitNo description
PfamPF001701.7E-9324382IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.0E-12324381No hitNo description
CDDcd147035.79E-23325376No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MDEPGAADPG AARHHLSPQL GAQPPVPRSP TPLDLASAAA SGYRRLSPSL RPPAHPQARL  60
PSPYAQIPAP GGGVHHARSL SQPLFFSLDS LPPPPYADLG AAAHAVPPSP PSSSSDPQQQ  120
PPPPLGLPPR KGAHRRSHSD IPFGGFAQLS PPLPPPAPVK REVTVAAEGC RSDGGDDAAL  180
YDLVNAYMDL DGLDPLNSSE DRHDDRDSRA SGTRAGSAAE SSENEAESQS TSVDRKDGGK  240
SRHCRSLSMD SFMGKLNFAA GDESPKLPLP SPGGGLTRSG SGSLEGGAVA LFDMEFANGE  300
FTESEKKKIM ANERLAEIAL TDPKRVKRIL ANRQSAARSK ERKMRYIQEL EHKVQVLQTE  360
ATTLSAQLTM LQRDSAGLAT QNNELKIRLQ AMEQQAQLRD ALNEALTAEV QRLKLATGEI  420
TDGRMPKSLQ QQMNSQMLQL QQLQIQQQQQ QQQQQAPQSQ QGQRQQQQQQ PQKSA*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9558090.0EU955809.1 Zea mays clone 1547185 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822599.10.0transcription factor RF2a-like
TrEMBLA0A2S3I5680.0A0A2S3I568_9POAL; Uncharacterized protein
STRINGSi015823m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62473650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.33e-73bZIP family protein