PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F00451.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 187aa MW: 21291 Da PI: 8.7341

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F00451.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61	3.7e-19	44	128	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YAk++ F v+k++ kk+ ++g++ t+ Cs++gk+++++k+ + +++++tr++C ak+k ++ ++++++++ l+HnH+++ Pahal.F00451.1 44 SFYKNYAKKTRFGVTKRRCKKN-EDGKVRYFTLACSRQGKAHNTSKD---TFKPNPSTRMQCPAKVKFYLQ-GEEFCISSVTLDHNHAVS 128 5***************9998.8888************9998...999*************9.9************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.6E-15	44	129	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MEAHLSSDND VQQEVSDEDD FIAEEILLQP TKGMLFDSED DAISFYKNYA KKTRFGVTKR 60 RCKKNEDGKV RYFTLACSRQ GKAHNTSKDT FKPNPSTRMQ CPAKVKFYLQ GEEFCISSVT 120 LDHNHAVSPN KARFLRCHKK LDVHAKRRLE LNDQAGIRNP EGNSFHTGLE LILVNFSHRS 180 NNLLLA*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024314597.1	4e-61	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_025825281.1	3e-62	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2T7CVQ6	9e-97	A0A2T7CVQ6_9POAL; Uncharacterized protein
STRING	Traes_2DS_637EBDDC6.1	1e-66	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16056	5	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-13	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Pahal.F00451.1