PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00223.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 329aa    MW: 35565.5 Da    PI: 7.0085
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00223.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.8e-09191231954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++l+P       +K++ a++L +A++YIk L
  Pahal.F00223.1 191 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYIKFL 231
                     699*****************87.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.555182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-15187243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-14188241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-15188237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-7192231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.92E-7205236No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MDNITHNSSS SSSWDLDMSL GSHHHPLLFD SHPNPAPPPP PPLPFHLSTS HHHHHHHPPP  60
PPPHHHHHHH PGLDPSPSSS LFPPHHRLHH LGLDIDPSPH HRHHEYGGGA HEQQEPGHHE  120
QEEMRQEAGV AQEEHGGGGG GAEDVEEELG AMKEMMYRIA AMQPVDIDPA TIKKPRRRNV  180
RISEDPQSVA ARHRRERISE RIRILQRLVP GGTKMDTASM LDEAIRYIKF LKRQVQELQH  240
QPPQQYPAAA AGVAAAGAGP STSVVVGPPG RPGFLPLGPG PLIDWAGLVR PVDIHGPTSS  300
SSSSSMGGAH AALGFGFSSA GQSSHGMH*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0650181e-164BT065018.1 Zea mays full-length cDNA clone ZM_BFc0135I21 mRNA, complete cds.
GenBankEU9741971e-164EU974197.1 Zea mays clone 442660 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822758.10.0transcription factor HEC2-like
TrEMBLA0A2S3HZP40.0A0A2S3HZP4_9POAL; Uncharacterized protein
STRINGSi015197m1e-112(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90513246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.18e-33bHLH family protein