PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F00188.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 226aa MW: 25343.2 Da PI: 7.5944 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 76.7 | 1.7e-24 | 10 | 56 | 2 | 48 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 rien rqvtf+kRr+g+lKKA ELSvLCda + +iifs +gkly+ Pahal.F00188.1 10 RIENPVHRQVTFCKRRAGLLKKARELSVLCDAHIGIIIFSAHGKLYD 56 8********************************************97 PP | |||||||
2 | K-box | 44.3 | 7.7e-16 | 92 | 174 | 18 | 99 |
K-box 18 qqelakLkkeienLqreqRhllGedLe.sLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +qe L++ei+ Lq+ +R + G+ + ++++eL+ Le+ Le + +iRs K+++++++i+ l+ ke +l+ +n+ L++k+ Pahal.F00188.1 92 KQETMVLQQEINLLQKGLRYIYGNRANeHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGMLKAANEILQEKIV 174 799999*****************998626****************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.352 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.1E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.19E-27 | 1 | 75 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.46E-39 | 2 | 78 | No hit | No description |
PRINTS | PR00404 | 4.3E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.5E-23 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 10.786 | 88 | 179 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.5E-20 | 91 | 173 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MARGKVQLRR IENPVHRQVT FCKRRAGLLK KARELSVLCD AHIGIIIFSA HGKLYDLATT 60 GTMEELIERY KTASGEAALP GDGGSGHRMD PKQETMVLQQ EINLLQKGLR YIYGNRANEH 120 MTVEELNALE RYLEIWMYNI RSAKMQIMIQ EIQALKSKEG MLKAANEILQ EKIVEQSGLL 180 DVGMTVADQQ NGHFSTVPLI EEITNPLTIL SGYSNCRGSE MGYSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-16 | 1 | 70 | 1 | 69 | MEF2C |
5f28_B | 5e-16 | 1 | 70 | 1 | 69 | MEF2C |
5f28_C | 5e-16 | 1 | 70 | 1 | 69 | MEF2C |
5f28_D | 5e-16 | 1 | 70 | 1 | 69 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB003326 | 0.0 | AB003326.1 Oryza sativa Japonica Group mRNA for MADS box-like protein, complete cds, clone:R3786. | |||
GenBank | AK069122 | 0.0 | AK069122.1 Oryza sativa Japonica Group cDNA clone:J023004P21, full insert sequence. | |||
GenBank | AY551925 | 0.0 | AY551925.1 Oryza sativa (japonica cultivar-group) MADS-box protein RMADS220 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821072.1 | 1e-167 | MADS-box transcription factor 26 | ||||
Swissprot | A2YQK9 | 1e-150 | MAD26_ORYSI; MADS-box transcription factor 26 | ||||
Swissprot | Q0J8G8 | 1e-150 | MAD26_ORYSJ; MADS-box transcription factor 26 | ||||
TrEMBL | A0A2S3HZM8 | 1e-166 | A0A2S3HZM8_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7D2N2 | 1e-166 | A0A2T7D2N2_9POAL; Uncharacterized protein | ||||
STRING | Si014419m | 1e-162 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1491 | 36 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 4e-63 | AGAMOUS-like 12 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F00188.1 |
Publications ? help Back to Top | |||
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