PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 251aa MW: 27041.7 Da PI: 5.4417 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.8 | 5.1e-10 | 83 | 131 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ rE+ RRd++N++f eL + l + + K +Ka+iL A++ + +L Pahal.F00013.1 83 TSKASREKMRRDKLNDRFLELGSTLEPG---KPVKADKAAILSDATRMVIQL 131 67889**********************9...99*************988777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.97E-13 | 77 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.366 | 80 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.06E-8 | 81 | 136 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.4E-12 | 83 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-7 | 84 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.7E-9 | 86 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MSLPPAPVEG GGGGGGSAGD DWFLDCGILD DLPAAACGAF PWDASPSSSN PSVEVGSYVN 60 TGDVFKEPGS NKRLRSGSSG RPTSKASREK MRRDKLNDRF LELGSTLEPG KPVKADKAAI 120 LSDATRMVIQ LRSEAQQLKD TNGSLEEKIK ELKAEKDELR DEKQKLKLEK ENLEHQMKLM 180 TSTPAYMPHP TLMPAPFPQA PLAPFHPQAQ AAGQKLMMPF VGYPGYPMWQ FMPPSEVDTS 240 KDSEACPPVA * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821110.1 | 0.0 | transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 5e-70 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A2S3I014 | 0.0 | A0A2S3I014_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J05070.1.p | 1e-169 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2023 | 38 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 8e-46 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F00013.1 |