PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E04449.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 270aa    MW: 28144.7 Da    PI: 7.1162
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E04449.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.5e-1382128354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN  +++Lr+++P        K++Ka+ L +++ ++k+L
  Pahal.E04449.1  82 KSHSEAERRRRERINAHLATLRTMVPCT-----DKMDKAALLAEVITHVKKL 128
                     58*************************7.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-1371131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.40879128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-1082128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-1483130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-1285134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.60E-492130No hitNo description
CDDcd048735.29E-6173237No hitNo description
Gene3DG3DSA:3.30.70.2602.9E-4173232No hitNo description
SuperFamilySSF550212.11E-5173241No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGSVPFSDTE LFDGFYGGFG GGGGCGHGYD EYGLGQLGAS TSPVLADGGT EEADGAAAST  60
ELLEAPKRKG DRRSEKAAMA LKSHSEAERR RRERINAHLA TLRTMVPCTD KMDKAALLAE  120
VITHVKKLKT SAARIRSHCA VPADADDVAV ELVSPDAASP PPSHGGGLLV KATLSCDDGA  180
DVFADVRSAL RPLRLRVVGS EVTTLGGRVR LTFLISPPPG DDAGLAESVR QALQSVLDKA  240
NSALEFAPRA SLLNKRRRVS TFESSSSSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18792ERRRRE
2254258KRRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818650.10.0transcription factor bHLH30-like
TrEMBLA0A2S3HYZ90.0A0A2S3HYZ9_9POAL; Uncharacterized protein
STRINGPavir.Ea00157.1.p1e-147(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110112938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.12e-24basic helix-loop-helix 32