PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E04433.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TCP
Protein Properties Length: 443aa    MW: 46003.1 Da    PI: 7.052
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E04433.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.41.3e-3487181284
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaesssssasn 84 
                     +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l  +             ++++s++ ++s ++s+++
  Pahal.E04433.2  87 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDKLEVLpawqptatasnaAAPPSSSTHPDSAENSDDQ 181
                     79**************************************************************7777655554433333333322222222221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.4E-3187183IPR005333Transcription factor, TCP
PROSITE profilePS5136933.25789147IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MGDAGQSHDH HGFQPQLLSF GSQHYVHQFA AQAQAPVAAS HSRSRGGAGA GGEIVAATSA  60
SHSRVRGGGG GGGEIVAVQG GHIVRSTGRK DRHSKVCTAR GPRDRRVRLS AHTAIQFYDV  120
QDRLGYDRPS KAVDWLIKNA KDAIDKLEVL PAWQPTATAS NAAAPPSSST HPDSAENSDD  180
QAQAITVAHT SFDFPGAGGA SGGASGTGFL PPSLDSDSIA DTIKSFFPMA GTAGGEASSS  240
TAAAQSSAMG FQSYTPDLLS RTGSHSQELR LSLQSLPDPM FHHRHQQQDR SHGHGGNGSA  300
QQALFPGYSF GGGAMWAEQA QGQRMVPWNV PDPGGGSTGG YLFNVSQQAA HMQAALAGQS  360
QFFFQRGPLQ SSNQPSERGW PETVEADNPM QQHQGGLSPA VFAPGIGFSG FRIPTRIQGD  420
EDHNGGGNGD KPPPSVSSAS HH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A9e-2194147154Putative transcription factor PCF6
5zkt_B9e-2194147154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557080.0EU955708.1 Zea mays clone 1543050 mutant cincinnata mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819000.10.0transcription factor PCF5-like
RefseqXP_025819001.10.0transcription factor PCF5-like
SwissprotQ8LT070.0PCF5_ORYSJ; Transcription factor PCF5
TrEMBLA0A2S3HYW50.0A0A2S3HYW5_9POAL; Uncharacterized protein
TrEMBLA0A2T7DST40.0A0A2T7DST4_9POAL; Uncharacterized protein
STRINGPavir.J03475.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.33e-66TCP family protein