PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E04433.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | TCP | ||||||||
Protein Properties | Length: 443aa MW: 46003.1 Da PI: 7.052 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.4 | 1.3e-34 | 87 | 181 | 2 | 84 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaesssssasn 84 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l + ++++s++ ++s ++s+++ Pahal.E04433.2 87 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDKLEVLpawqptatasnaAAPPSSSTHPDSAENSDDQ 181 79**************************************************************7777655554433333333322222222221 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.4E-31 | 87 | 183 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.257 | 89 | 147 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MGDAGQSHDH HGFQPQLLSF GSQHYVHQFA AQAQAPVAAS HSRSRGGAGA GGEIVAATSA 60 SHSRVRGGGG GGGEIVAVQG GHIVRSTGRK DRHSKVCTAR GPRDRRVRLS AHTAIQFYDV 120 QDRLGYDRPS KAVDWLIKNA KDAIDKLEVL PAWQPTATAS NAAAPPSSST HPDSAENSDD 180 QAQAITVAHT SFDFPGAGGA SGGASGTGFL PPSLDSDSIA DTIKSFFPMA GTAGGEASSS 240 TAAAQSSAMG FQSYTPDLLS RTGSHSQELR LSLQSLPDPM FHHRHQQQDR SHGHGGNGSA 300 QQALFPGYSF GGGAMWAEQA QGQRMVPWNV PDPGGGSTGG YLFNVSQQAA HMQAALAGQS 360 QFFFQRGPLQ SSNQPSERGW PETVEADNPM QQHQGGLSPA VFAPGIGFSG FRIPTRIQGD 420 EDHNGGGNGD KPPPSVSSAS HH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 9e-21 | 94 | 147 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 9e-21 | 94 | 147 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU955708 | 0.0 | EU955708.1 Zea mays clone 1543050 mutant cincinnata mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819000.1 | 0.0 | transcription factor PCF5-like | ||||
Refseq | XP_025819001.1 | 0.0 | transcription factor PCF5-like | ||||
Swissprot | Q8LT07 | 0.0 | PCF5_ORYSJ; Transcription factor PCF5 | ||||
TrEMBL | A0A2S3HYW5 | 0.0 | A0A2S3HYW5_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7DST4 | 0.0 | A0A2T7DST4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J03475.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 3e-66 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E04433.2 |