PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E04368.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family DBB
Protein Properties Length: 337aa    MW: 35132.3 Da    PI: 5.8069
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E04368.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.32.1e-05444539
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                     C+ +e  e++  C  ++  lC+ C    H        H +
  Pahal.E04368.1  4 LCSACEAAEARVLCCADEAALCALCDRDVHAAnrlagkHHR 44
                    7******99******************99955677778554 PP
2zf-B_box28.23.9e-095896638
        zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                    C+ ++e ++ +fC +++ llC++C ++ H        H+
  Pahal.E04368.1 58 CDICQESHAYFFCVEDRALLCRSCDVAVHTAnafvsgHR 96
                    ******99*******************995455666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.4E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.623147IPR000315B-box-type zinc finger
CDDcd000211.55E-7347No hitNo description
SMARTSM003361.3E-1653100IPR000315B-box-type zinc finger
PROSITE profilePS501199.72758100IPR000315B-box-type zinc finger
CDDcd000216.21E-1058100No hitNo description
PfamPF006435.3E-85896IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MKVLCSACEA AEARVLCCAD EAALCALCDR DVHAANRLAG KHHRLPLQPP AAASVPGCDI  60
CQESHAYFFC VEDRALLCRS CDVAVHTANA FVSGHRRFLL TGVQVGLQPD AQEPAPDPPN  120
AASAAAAPAP LPTPPSAKKA RSSPAPLYSD DDIDWAIGGP DVGIAGNLPD WSVVDEQFSA  180
PVPRPAEPLV TRTPSKRSPR RPVQGCLAGG MPDWTLDEFF GFSDFNPGLG FTENGTSKAD  240
SGKLGSTESS PAGRSSSVSA QDFFGQVPEF HQWSVPELPS PPTASGLHWQ GGPRHGAAAA  300
DTAAVSVPDI SSPENPFRCF AAGAGQTQPA PAKRRR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819038.10.0B-box zinc finger protein 22-like
TrEMBLA0A2T7DSJ90.0A0A2T7DSJ9_9POAL; Uncharacterized protein
STRINGPavir.Eb00238.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-36light-regulated zinc finger protein 1