PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E04366.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 297aa MW: 33513 Da PI: 9.7874 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.9 | 2.1e-31 | 36 | 85 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ Pahal.E04366.6 36 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 85 79***********************************************8 PP | |||||||
2 | K-box | 101.5 | 1.2e-33 | 104 | 200 | 4 | 100 |
K-box 4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 s++ ++e +a+++qqe+akL++ i++Lq+++R l+G+ ++++s+++L+qLe +Lek++ kiR++Knell++++e++qk+e +lq++n++Lr+k Pahal.E04366.6 104 SNS-GtVAEVNAQHYQQESAKLRQTISSLQNSNRTLVGDAIHTMSVRDLKQLEIRLEKGIAKIRARKNELLYAEVEYMQKREMDLQSDNMYLRSK 197 333.25999************************************************************************************** PP K-box 98 lee 100 ++e Pahal.E04366.6 198 VAE 200 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.221 | 28 | 88 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.3E-41 | 28 | 87 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.51E-46 | 29 | 102 | No hit | No description |
SuperFamily | SSF55455 | 5.76E-33 | 29 | 100 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 30 | 84 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-33 | 30 | 50 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-26 | 37 | 84 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-33 | 50 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-33 | 65 | 86 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.9E-25 | 113 | 198 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.808 | 114 | 204 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0048443 | Biological Process | stamen development | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MLNMMADLSC GSSKVKEQPA PTGSGDKPGR GKIEIKRIEN TTNRQVTFCK RRNGLLKKAY 60 ELSVLCDAEV ALIVFSSRGR LYEYANNSVK ATIERYKKAN SDTSNSGTVA EVNAQHYQQE 120 SAKLRQTISS LQNSNRTLVG DAIHTMSVRD LKQLEIRLEK GIAKIRARKN ELLYAEVEYM 180 QKREMDLQSD NMYLRSKVAE NNERGQPPMN MMGAPSTSEY DHMVPYDSRN FLQVNIMQQP 240 QHYSHQLQPT TLQLGRRGCP KVVSTHARGY YHVSNRDYIT LNVCGTNNHI VTSTSV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 9e-21 | 29 | 115 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3kov_B | 9e-21 | 29 | 115 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3kov_I | 9e-21 | 29 | 115 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3kov_J | 9e-21 | 29 | 115 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3p57_A | 9e-21 | 29 | 115 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3p57_B | 9e-21 | 29 | 115 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3p57_C | 9e-21 | 29 | 115 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3p57_D | 9e-21 | 29 | 115 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3p57_I | 9e-21 | 29 | 115 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3p57_J | 9e-21 | 29 | 115 | 1 | 90 | Myocyte-specific enhancer factor 2A |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269|PubMed:11828031, ECO:0000269|PubMed:16326928, ECO:0000269|PubMed:9869408}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00609 | ChIP-seq | Transfer from AT4G18960 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU960810 | 0.0 | EU960810.1 Zea mays clone 228787 MADS-box transcription factor 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816639.1 | 0.0 | MADS-box transcription factor 3 isoform X2 | ||||
Swissprot | Q40704 | 1e-150 | MADS3_ORYSJ; MADS-box transcription factor 3 | ||||
TrEMBL | A0A2S3HYQ3 | 0.0 | A0A2S3HYQ3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea00226.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-105 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E04366.6 |
Publications ? help Back to Top | |||
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