PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E04354.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 852aa    MW: 92524.1 Da    PI: 6.1721
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E04354.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-181573357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++++++ps  +r++L + +    +++ +q+kvWFqNrR +ek+
  Pahal.E04354.1 15 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRDCpvlaNVDPKQIKVWFQNRRCREKQ 73
                    6789*****************************************************97 PP
2START175.92.4e-551623692204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++ g a+ra+g+v m++a  v+e+l+d++ W ++++++e+++v+  g  g+++l 
  Pahal.E04354.1 162 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRPLWLRDCRSMEVVNVLPAGnnGTIELL 255
                     789*******************************************************.8888888888******************9******* PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+p Rdf+ +Ry+  l +g++v++++S++s+q  p+    ++++R+e+lpSg+li+p+++g+s +++v+h+dl+ +++++++r+l+
  Pahal.E04354.1 256 YMQLYAPTTLAPaRDFWLLRYTSILDDGSLVVCERSLSSKQGGPSmplVQPFIRGEMLPSGFLIRPSDGGGSIIHIVDHMDLEPWSVPEVVRPLY 350
                     ********************************************999999********************************************* PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+ + ++kt +a+l++++
  Pahal.E04354.1 351 ESSPMVAQKTSMAALRYLR 369
                     ***************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3541074IPR001356Homeobox domain
SMARTSM003893.0E-151278IPR001356Homeobox domain
CDDcd000861.67E-151375No hitNo description
SuperFamilySSF466891.88E-161576IPR009057Homeodomain-like
PfamPF000463.6E-161573IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-171773IPR009057Homeodomain-like
CDDcd146864.17E-667106No hitNo description
PROSITE profilePS5084825.633152371IPR002913START domain
CDDcd088754.94E-75156370No hitNo description
Gene3DG3DSA:3.30.530.201.3E-22159345IPR023393START-like domain
SMARTSM002345.1E-46161371IPR002913START domain
SuperFamilySSF559617.28E-37161372No hitNo description
PfamPF018524.4E-53162369IPR002913START domain
PfamPF086702.7E-50704847IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 852 aa     Download sequence    Send to blast
MVTAKEAAAA MDPSKYVRYT PEQVEALERL YYECPKPSSL RRQQLVRDCP VLANVDPKQI  60
KVWFQNRRCR EKQRKESSRL QALNRKLTAM NKLLMEENDR LQKQVSQLVY ENGYYRQQTQ  120
SAGLTTTDTS CESVVTSGQQ NVAAAQPQAQ PRDASPAGLM SIAEETLTEF LSKATGTAVE  180
WVQMPGMKPG PDSIGIIAIS HGCAGVAARA CGLVGMEPAK VAEILKDRPL WLRDCRSMEV  240
VNVLPAGNNG TIELLYMQLY APTTLAPARD FWLLRYTSIL DDGSLVVCER SLSSKQGGPS  300
MPLVQPFIRG EMLPSGFLIR PSDGGGSIIH IVDHMDLEPW SVPEVVRPLY ESSPMVAQKT  360
SMAALRYLRQ VAHEDTHSVI TGWGRQPAAL RALSQKLTRG FNEALNGLAD DGWSVIESDG  420
VDDVCISVNS SPSRVINCNA AFNNGLPIVS SSVLCAKASM LLQDVSPPAL LRFMREQRSQ  480
WADSNLDAFF ASAMKPNFCN LPMSRLGGFS GQVILPLAHT FDPEEFLEVI KLGNASTYQD  540
TLMHRDLFLL QMYNGVDENT VGTCSELIFA PIDASFSDDS PLLPSGFRII PIDSPLDTPS  600
PKCTLDLAST LEVGTPRRRI HGAGGSGNAA CAGSKAVMTI AFQFAFESHL QDSVVAMARQ  660
YMRSIIASVQ RIALALSSSR LVPQAGGISH APAAAAAATP EAATLSRWIC QSYRFHFGAE  720
LIKSADASGC EAGLKALWHH ASAILCCSLK AMPVFTFANQ SGLDMLETTL VALQDITLEK  780
VFDEQGRKNL CAELPGVMEQ GFACIPGGLC VSGLGRPVSY EKALAWKVLD DDSGAHCICF  840
MFVNWSFVAS M*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816436.10.0homeobox-leucine zipper protein HOX29-like
SwissprotA2WLR50.0HOX29_ORYSI; Homeobox-leucine zipper protein HOX29
TrEMBLA0A2S3HYQ00.0A0A2S3HYQ0_9POAL; Uncharacterized protein
STRINGPavir.Eb00113.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein