PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E04322.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 463aa    MW: 49008.9 Da    PI: 6.6983
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E04322.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.39.8e-12262304855
                     HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      Er+RR+++N++f+ L+ +lP+ a      K +K +iL +A eY++sL+
  Pahal.E04322.1 262 SERKRREKLNDSFHALKAVLPPgA------KKDKTSILIRAREYVRSLE 304
                     6********************966......99999***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.84254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-15255320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.54E-12256308No hitNo description
Gene3DG3DSA:4.10.280.101.7E-12258302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-11260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-9262304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.20.5.1706.7E-4303321No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MDSSSWLHGY IGNAGGGNNG FMCGYAVGSC TPAELQYREE EQQQFLISAQ IQHHLNQISM  60
RMNMDDEASA YDVPSNDGGG GVSPPVGVHN TIGVDGGLLD PRHAGSFPSS SSSSSLSLPS  120
ASLSCSPESS AHVLAAPGAA ATTACSQYLE VSSQVPLPPA VPYDHQQYAN LHVPAPAAAM  180
VPEPPATNTG AFKRYARHLG PKRPPKPGAC GQRMFKTAMS VLSKMHAAAR YSAQQQYYYQ  240
QAASAEAAAP PPSVNQLQHM FSERKRREKL NDSFHALKAV LPPGAKKDKT SILIRAREYV  300
RSLESKVSEL EEKNRLLETR LVRGDDSSDD GASKDAAAGN DHDSGAKVQV EITRAANEER  360
PAVAEPRDLC TLKIAVSSPC NMTDVAVRTL QCLKEQIGDG VSLVAMSTSG SAEPSEAKNT  420
TSARADLTLQ IKSPPGWEEQ PVKDAVAKVV ADALTLPPAA PR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262267ERKRRE
2263268RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817328.10.0putative transcription factor bHLH041
TrEMBLA0A2S3HYL50.0A0A2S3HYL5_9POAL; Uncharacterized protein
STRINGPavir.Ea00369.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-17bHLH family protein