PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E04315.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 478aa MW: 50313.3 Da PI: 8.7992

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E04315.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.6e-06	73	95	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cgk F r nL+ H r H Pahal.E04315.1 73 YVCEVCGKGFQRDQNLQLHRRGH 95 9********************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.71E-7	72	95	No hit	No description
SMART	SM00355	0.0081	73	95	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.822	73	95	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	4.5E-6	73	95	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	75	95	IPR007087	Zinc finger, C2H2
SMART	SM00355	38	115	145	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.71E-7	145	170	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MMLKDLAAIQ QQQQMAADEN MSNLTSASGD QASVSSHPLP PPAKKKRSLP GNPDPDAEVI 60 ALSPRTLMAT NRYVCEVCGK GFQRDQNLQL HRRGHNLPWK LKQRNPKEAV RKKVYVCPEP 120 GCVHHDPARA LGDLTGIKKH FSRKHGEKKW KCDRCAKRYA VHSDWKAHSK VCGTREYRCD 180 CGTLFSRRDS FITHRAFCDA LAEESARAVT AAAAVAGQHH PGMLFSQGAG GGEGGAAGGL 240 HLPAVLDPSQ PLVGHGMSLQ ELCLKREQQQ QQQFAPSWLT AQQQQHLELQ AAGAGNPAVF 300 VSARPLDQDY MGSSTPESTA PPAGLGFGFS PSSSAGTASA HMSATALLQK AAQMGATLSR 360 PSNQGQMAST HSTSTTSAAT ANPAAAAAAG NVPSTGAGAV GFGASHHFGA EERTRADRDA 420 AVGAAGGGND GLTRDFLGLR AFSHGDILSM AGFDPCMSSA SSAAYEQGHQ SSKQWHV*

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MMLKDLAAIQ QQQQMAADEN MSNLTSASGD QASVSSHPLP PPAKKKRSLP GNPDPDAEVI  60
ALSPRTLMAT NRYVCEVCGK GFQRDQNLQL HRRGHNLPWK LKQRNPKEAV RKKVYVCPEP  120
GCVHHDPARA LGDLTGIKKH FSRKHGEKKW KCDRCAKRYA VHSDWKAHSK VCGTREYRCD  180
CGTLFSRRDS FITHRAFCDA LAEESARAVT AAAAVAGQHH PGMLFSQGAG GGEGGAAGGL  240
HLPAVLDPSQ PLVGHGMSLQ ELCLKREQQQ QQQFAPSWLT AQQQQHLELQ AAGAGNPAVF  300
VSARPLDQDY MGSSTPESTA PPAGLGFGFS PSSSAGTASA HMSATALLQK AAQMGATLSR  360
PSNQGQMAST HSTSTTSAAT ANPAAAAAAG NVPSTGAGAV GFGASHHFGA EERTRADRDA  420
AVGAAGGGND GLTRDFLGLR AFSHGDILSM AGFDPCMSSA SSAAYEQGHQ SSKQWHV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-32	146	207	3	64	Zinc finger protein JACKDAW
5b3h_F	5e-32	146	207	3	64	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	112	KLKQRNPKEAVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK105663	0.0	AK105663.1 Oryza sativa Japonica Group cDNA clone:001-200-H06, full insert sequence.
GenBank	AK250971	0.0	AK250971.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100p19, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815747.1	0.0	protein indeterminate-domain 7-like
Swissprot	Q8H1F5	1e-121	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A3L6R126	0.0	A0A3L6R126_PANMI; Uncharacterized protein
STRING	Pavir.Eb00288.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-106	indeterminate(ID)-domain 7

Link Out ? help Back to Top
Phytozome	Pahal.E04315.1

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]