PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E04291.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 264aa MW: 27791.1 Da PI: 6.504 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.3 | 1.3e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEde l +v+++G+g +W + + + g++R++k+c++rw++yl Pahal.E04291.1 14 RGPWSPEEDEALRSYVQRHGSGgNWISMPLKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 43.2 | 8.9e-14 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T eEd ++ + qlG++ W++Ia+ + gRt++++k++w++ Pahal.E04291.1 69 GGFTDEEDAVIISLYSQLGSK-WSLIASQLE-GRTDNDVKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.87 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.42E-27 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.90E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.192 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-12 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.21E-10 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MGRTPCCDRT AVKRGPWSPE EDEALRSYVQ RHGSGGNWIS MPLKAGLKRC GKSCRLRWLN 60 YLRPDIRHGG FTDEEDAVII SLYSQLGSKW SLIASQLEGR TDNDVKNYWN TKLKKRLLAA 120 AATAGIVSTR SPPSVPRLPA PPASTPSAAA TFATHASSLF PSLAIPTVKT EMYNCDDFLV 180 PAAFRDDPFA AAGGSADAAA DGSTSASAAS SASNWSADNG AVGSGEGSFL LDFCAGSGLG 240 AADDHLQLPG DYYYPLDPSL SLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-23 | 14 | 117 | 7 | 108 | B-MYB |
1h8a_C | 4e-23 | 14 | 117 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in the regulation of meristematic competence, such as CUC2. Positively regulates axillary meristems (AMs) formation and development, especially at early phases of vegetative growth, probably by specifying a stem cell niche for AM formation. Modulates the negative regulation mediated by gibberellic acid on the timing of developmental phase transitions. {ECO:0000269|PubMed:16461581, ECO:0000269|PubMed:16473968}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By a shift from short days to long days, in the axils of primordia on the elongating stem. {ECO:0000269|PubMed:16461581}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679416 | 1e-165 | HF679416.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB10 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817369.1 | 0.0 | transcription factor RAX1-like | ||||
Refseq | XP_025817370.1 | 0.0 | transcription factor RAX1-like | ||||
Swissprot | Q9FG68 | 2e-66 | RAX1_ARATH; Transcription factor RAX1 | ||||
TrEMBL | A0A2S3HYM1 | 0.0 | A0A2S3HYM1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea00256.1.p | 1e-142 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37780.1 | 4e-61 | myb domain protein 87 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E04291.1 |
Publications ? help Back to Top | |||
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