PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E04291.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 264aa    MW: 27791.1 Da    PI: 6.504
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E04291.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEde l  +v+++G+g +W + + + g++R++k+c++rw++yl
   Pahal.E04291.1 14 RGPWSPEEDEALRSYVQRHGSGgNWISMPLKAGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP

2Myb_DNA-binding43.28.9e-1469111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T eEd  ++ +  qlG++ W++Ia+ +  gRt++++k++w++
   Pahal.E04291.1  69 GGFTDEEDAVIISLYSQLGSK-WSLIASQLE-GRTDNDVKNYWNT 111
                      569******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.87962IPR017930Myb domain
SuperFamilySSF466891.42E-2712109IPR009057Homeodomain-like
SMARTSM007171.6E-111364IPR001005SANT/Myb domain
PfamPF002491.6E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-231569IPR009057Homeodomain-like
CDDcd001674.90E-91662No hitNo description
PROSITE profilePS5129422.19263117IPR017930Myb domain
SMARTSM007171.3E-1167115IPR001005SANT/Myb domain
PfamPF002499.1E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2370117IPR009057Homeodomain-like
CDDcd001676.21E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MGRTPCCDRT AVKRGPWSPE EDEALRSYVQ RHGSGGNWIS MPLKAGLKRC GKSCRLRWLN  60
YLRPDIRHGG FTDEEDAVII SLYSQLGSKW SLIASQLEGR TDNDVKNYWN TKLKKRLLAA  120
AATAGIVSTR SPPSVPRLPA PPASTPSAAA TFATHASSLF PSLAIPTVKT EMYNCDDFLV  180
PAAFRDDPFA AAGGSADAAA DGSTSASAAS SASNWSADNG AVGSGEGSFL LDFCAGSGLG  240
AADDHLQLPG DYYYPLDPSL SLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23141177108B-MYB
1h8a_C4e-231411727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in the regulation of meristematic competence, such as CUC2. Positively regulates axillary meristems (AMs) formation and development, especially at early phases of vegetative growth, probably by specifying a stem cell niche for AM formation. Modulates the negative regulation mediated by gibberellic acid on the timing of developmental phase transitions. {ECO:0000269|PubMed:16461581, ECO:0000269|PubMed:16473968}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By a shift from short days to long days, in the axils of primordia on the elongating stem. {ECO:0000269|PubMed:16461581}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794161e-165HF679416.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB10 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817369.10.0transcription factor RAX1-like
RefseqXP_025817370.10.0transcription factor RAX1-like
SwissprotQ9FG682e-66RAX1_ARATH; Transcription factor RAX1
TrEMBLA0A2S3HYM10.0A0A2S3HYM1_9POAL; Uncharacterized protein
STRINGPavir.Ea00256.1.p1e-142(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.14e-61myb domain protein 87
Publications ? help Back to Top
  1. Schnaubelt D,Schulz P,Hannah MA,Yocgo RE,Foyer CH
    A phenomics approach to the analysis of the influence of glutathione on leaf area and abiotic stress tolerance in Arabidopsis thaliana.
    Front Plant Sci, 2013. 4: p. 416
    [PMID:24204368]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Yu YT, et al.
    Overexpression of the MYB37 transcription factor enhances abscisic acid sensitivity, and improves both drought tolerance and seed productivity in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 90(3): p. 267-79
    [PMID:26646286]