PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E04178.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | BES1 | ||||||||
Protein Properties | Length: 178aa MW: 19601.7 Da PI: 9.627 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 129.8 | 3.2e-40 | 50 | 163 | 2 | 115 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr.kgskpleeaeaagssas.aspessl 94 +s r+pt +ErEnn++RERrRR++aa+iyaGLRa+++y lpk+aD+n+Vl+ALc+eAG+ v+dDG++ r +g a+ s++ ++ ss Pahal.E04178.1 50 TSLRHPTPRERENNRQRERRRRQVAARIYAGLRAHAGYTLPKHADQNDVLRALCAEAGYHVDDDGNVTRlQGVFDG--AAGPSWSSDhHQKPSSR 142 789*****************************************************************95554444..33333333303334444 PP DUF822 95 qsslkssalaspvesysaspk 115 + ++++ +l+ p + + ++ Pahal.E04178.1 143 SGTTEAATLQRPEQRRQEEEE 163 456666666666655555444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 6.6E-31 | 52 | 135 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MEVGDGREEG EAAAAVAMEV APVTGRRGCI RSTQGPWTVR RRGRGGGLTT SLRHPTPRER 60 ENNRQRERRR RQVAARIYAG LRAHAGYTLP KHADQNDVLR ALCAEAGYHV DDDGNVTRLQ 120 GVFDGAAGPS WSSDHHQKPS SRSGTTEAAT LQRPEQRRQE EEEAKLSLEL TLSFAYM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 7e-12 | 73 | 118 | 392 | 437 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 7e-12 | 73 | 118 | 392 | 437 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 7e-12 | 73 | 118 | 392 | 437 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 7e-12 | 73 | 118 | 392 | 437 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU947756 | 1e-119 | EU947756.1 Zea mays clone 356679 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815736.1 | 1e-127 | protein BRASSINAZOLE-RESISTANT 2-like | ||||
TrEMBL | A0A2S3HY92 | 1e-126 | A0A2S3HY92_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb00361.1.p | 3e-71 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13201 | 30 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19350.3 | 5e-15 | BES1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E04178.1 |