PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E04176.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 483aa MW: 50663.5 Da PI: 5.5809 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.3 | 1.2e-31 | 266 | 321 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++ LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Pahal.E04176.1 266 KARRCWSPELHRRFVNALQILGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 321 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.69 | 263 | 323 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.12E-17 | 263 | 324 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.4E-28 | 264 | 324 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-26 | 266 | 321 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.0E-6 | 268 | 319 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009266 | Biological Process | response to temperature stimulus | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010452 | Biological Process | histone H3-K36 methylation | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:1903507 | Biological Process | negative regulation of nucleic acid-templated transcription | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence Send to blast |
MASSPSDLTL DYKPANGNGG GGGAYAVIPK QQEPLVDGHH LTTEQTTQKL REFLARLEEE 60 RLKIDAFKRE LPLCMHLLNH AMEAYRQQLE AYQLGSLQGA PARPLVLEEF IPLKNIGIDA 120 AGDKMGNPPS EKASWMESAQ LWNGPGAAVA AADTAAKGPQ TPKESSEHPL PIDTLGALDA 180 AAGQRNGGAF LPFGKDKVAA EGAALPELAL APSEKDAAEA ERKPYLDAAG ANGGLGARRD 240 LQNGAKPASN APDGQAPPPP PQTHRKARRC WSPELHRRFV NALQILGGAQ VATPKQIREL 300 MKVDGLTNDE VKSHLQKYRL HTRRPMPTPP APATAAPQLV VLGGIWVPPE YATQAAGQAI 360 YGAHPATQPH YTAAVAAAQE YYPPPAAVHH LQHHPAAMVH RAAAPPPAAA YKAAMAGSPP 420 ESSEGRGSAG GGSVGVGGGR ERSESIEEEE GEDREDDDDD DDDVPAAKAD GEESAGAAAT 480 KY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-13 | 266 | 319 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-13 | 266 | 319 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-13 | 266 | 319 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-13 | 266 | 319 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play a role in regulatory networks controlling development and metabolism. {ECO:0000250|UniProtKB:Q6Z869}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00261 | DAP | Transfer from AT2G03500 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT086572 | 1e-178 | BT086572.2 Zea mays full-length cDNA clone ZM_BFc0184N23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819732.1 | 0.0 | transcription factor NIGTH1 | ||||
Swissprot | Q5VRW2 | 1e-148 | NOH1_ORYSJ; Transcription factor NIGTH1 | ||||
TrEMBL | A0A2S3HY88 | 0.0 | A0A2S3HY88_9POAL; Uncharacterized protein | ||||
STRING | Si001230m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9773 | 33 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 6e-72 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E04176.1 |
Publications ? help Back to Top | |||
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