PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E04060.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-X1
Protein Properties Length: 863aa    MW: 94056.5 Da    PI: 8.6415
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E04060.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.44.8e-06285302118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG H+C   CH GpCppC
  Pahal.E04060.2 285 CGLHRCPVNCHDGPCPPC 302
                     ****************** PP
2zf-NF-X120.51e-06392411119
        zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                     CG+HkC + CH+GpC++ C+
  Pahal.E04060.2 392 CGRHKCPERCHRGPCDEtCR 411
                     *******************8 PP
3zf-NF-X117.59.1e-06445464120
        zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                     CG+H C++ C+ G+CppC++
  Pahal.E04060.2 445 CGRHACKRRCCAGDCPPCSE 464
                     ******************85 PP
4zf-NF-X120.88.3e-07472491120
        zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                     CG+HkC ++CH+G C pCp+
  Pahal.E04060.2 472 CGNHKCLSPCHRGACSPCPL 491
                     ******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500898.624130183IPR001841Zinc finger, RING-type
PROSITE patternPS013590130182IPR019786Zinc finger, PHD-type, conserved site
SMARTSM004380.008232250IPR000967Zinc finger, NF-X1-type
PfamPF014220.0027233249IPR000967Zinc finger, NF-X1-type
CDDcd060089.95E-9275323No hitNo description
SMARTSM004380.0013285304IPR000967Zinc finger, NF-X1-type
PfamPF014221.1E-4285302IPR000967Zinc finger, NF-X1-type
CDDcd060083.40E-7328368No hitNo description
SMARTSM004380.018338357IPR000967Zinc finger, NF-X1-type
PfamPF014220.18338356IPR000967Zinc finger, NF-X1-type
CDDcd060085.95E-9382431No hitNo description
SMARTSM004380.0017392412IPR000967Zinc finger, NF-X1-type
PfamPF014226.1E-4392411IPR000967Zinc finger, NF-X1-type
CDDcd060086.86E-9435483No hitNo description
SMARTSM004380.0069445464IPR000967Zinc finger, NF-X1-type
PfamPF014220.0014445463IPR000967Zinc finger, NF-X1-type
CDDcd060083.80E-10462510No hitNo description
SMARTSM004380.0083472491IPR000967Zinc finger, NF-X1-type
PfamPF014225.8E-5472490IPR000967Zinc finger, NF-X1-type
SMARTSM0043825535550IPR000967Zinc finger, NF-X1-type
PfamPF0142234539549IPR000967Zinc finger, NF-X1-type
SMARTSM004380.025625643IPR000967Zinc finger, NF-X1-type
PfamPF014220.13625642IPR000967Zinc finger, NF-X1-type
SMARTSM004382.6688709IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 863 aa     Download sequence    Send to blast
MPSSYAAAAA GSSSRKPNRN PTAAAAAGSS SRKPNRTPTP TAAAATARPQ APSPSPSPAP  60
APPAANPSAA SDSDPSSYSS SSGDEADLTA SDSATASVVS AYLSVAGEGA DLSKVGIFLS  120
SAARRRSPPC LICFDPIRPS DPVWSCSSSC FAILHLTCIQ SWAHQSASGA AVPCPTWGCP  180
KCRFAYPKSQ TPTSYLCFCS KTVDPTPDPW ILPHSCGDVC GRRLNANLDS GCEHTCLLLC  240
HPGPCPPCPA VVPNAPCFCG VRREPRRCAH QRYSCLGKCN KRLSCGLHRC PVNCHDGPCP  300
PCAVRGKHKC ECGETMEEKL CSERVFQCKR ECGGMLDCGK HRCERGCHGG RCGECPLRGR  360
RTCPCGKKDY PKLECDAEAA TCGSTCEKVL GCGRHKCPER CHRGPCDETC RLVITKSCRC  420
GGLKKEVPCY QELTCERKCQ RLRNCGRHAC KRRCCAGDCP PCSETCDRKL RCGNHKCLSP  480
CHRGACSPCP LMKTISCACG KTCFEVPCGT EKNQKPPKCS KKCNIPRLCR HKLECRPHKC  540
HYGACPPCKL TCGEEFSCGH ICKERCHGPI SPPNPEFTLK PTKKKMEKQI ECTPGTPCPP  600
CKEVVLVPCF GQHLGQERAV REPPCSHRCP LPCHLSDCPP CKVLVKKPCH CGAMVHAFEC  660
VFFNNLKAKE QLKVRSCGGP CHRKLPNCPH LCSEVCHPGT CPSVDQCMKK VNVRCACNTL  720
KQEWICQDVL KEYRNSGRDP KEVPKSQFGV GLLACGKDCK KKVKVPDPEL HLRKSQETKS  780
PAVEVANVPK RRKRRDRGQE VKVSKFQEVK AYVLRVLLII LLSIIIAAGL YLLWKGIFRL  840
SDWMNEMEVQ RARQRHPRGA ML*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1788794PKRRKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0666630.0BT066663.1 Zea mays full-length cDNA clone ZM_BFb0042A15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819816.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A2S3HXY80.0A0A2S3HXY8_9POAL; Uncharacterized protein
STRINGPavir.J07154.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors