PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.E03927.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 296aa MW: 32858.9 Da PI: 9.6162 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.3 | 4.2e-09 | 30 | 73 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqk 46 WT+eE +++ +a + l + +W+ +ar ++ gRt ++++++ + Pahal.E03927.1 30 WTAEENKQFERALAGLDLRcpDWEQVARAIP-GRTVREVVHHFKS 73 *****************99************.**********986 PP | |||||||
2 | Myb_DNA-binding | 48.1 | 2.6e-15 | 143 | 187 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky Pahal.E03927.1 143 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVQTRTPTQVASHAQKY 187 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.528 | 25 | 79 | IPR017884 | SANT domain |
SMART | SM00717 | 2.2E-4 | 26 | 77 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.62E-8 | 28 | 79 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-6 | 30 | 74 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.74E-7 | 30 | 74 | No hit | No description |
PROSITE profile | PS51294 | 18.359 | 136 | 192 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.28E-18 | 137 | 192 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.7E-17 | 139 | 190 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.4E-13 | 140 | 190 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-12 | 140 | 186 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.9E-13 | 143 | 187 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.76E-12 | 143 | 188 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 296 aa Download sequence Send to blast |
MMRETYMEVL PPMDHIASRN SWYHPAVRIW TAEENKQFER ALAGLDLRCP DWEQVARAIP 60 GRTVREVVHH FKSLEVDVQQ IENGMVPFPF YGGGGAAGSF TLQWDGNGGG GPGDFRHGYR 120 FGGGCGKRHP GRTPEQERKK GVPWTEEEHK LFLLGLKKYG KGDWRNISRN FVQTRTPTQV 180 ASHAQKYFIR LNSGGKDKRR SSIHDITTVN LTDDRPPSPS QSSLITNQSN TSAPTTAVGQ 240 FSLTADVKQH STANLPFNSP SRTPVMPTFG MGLQDQGLQC GPLHDQLVGN QSMLF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-14 | 28 | 96 | 9 | 78 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817822.1 | 0.0 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-78 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2S3HXR7 | 0.0 | A0A2S3HXR7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb00572.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7886 | 33 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G38090.1 | 3e-63 | MYB family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.E03927.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|