PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E03927.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 296aa    MW: 32858.9 Da    PI: 9.6162
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E03927.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.34.2e-093073446
                     S-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqk 46
                     WT+eE +++ +a + l  +  +W+ +ar ++ gRt  ++++++ +
   Pahal.E03927.1 30 WTAEENKQFERALAGLDLRcpDWEQVARAIP-GRTVREVVHHFKS 73
                     *****************99************.**********986 PP

2Myb_DNA-binding48.12.6e-15143187347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
   Pahal.E03927.1 143 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVQTRTPTQVASHAQKY 187
                      8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.5282579IPR017884SANT domain
SMARTSM007172.2E-42677IPR001005SANT/Myb domain
SuperFamilySSF466892.62E-82879IPR009057Homeodomain-like
PfamPF002492.0E-63074IPR001005SANT/Myb domain
CDDcd001671.74E-73074No hitNo description
PROSITE profilePS5129418.359136192IPR017930Myb domain
SuperFamilySSF466896.28E-18137192IPR009057Homeodomain-like
TIGRFAMsTIGR015575.7E-17139190IPR006447Myb domain, plants
SMARTSM007173.4E-13140190IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-12140186IPR009057Homeodomain-like
PfamPF002499.9E-13143187IPR001005SANT/Myb domain
CDDcd001677.76E-12143188No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MMRETYMEVL PPMDHIASRN SWYHPAVRIW TAEENKQFER ALAGLDLRCP DWEQVARAIP  60
GRTVREVVHH FKSLEVDVQQ IENGMVPFPF YGGGGAAGSF TLQWDGNGGG GPGDFRHGYR  120
FGGGCGKRHP GRTPEQERKK GVPWTEEEHK LFLLGLKKYG KGDWRNISRN FVQTRTPTQV  180
ASHAQKYFIR LNSGGKDKRR SSIHDITTVN LTDDRPPSPS QSSLITNQSN TSAPTTAVGQ  240
FSLTADVKQH STANLPFNSP SRTPVMPTFG MGLQDQGLQC GPLHDQLVGN QSMLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-142896978RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817822.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H71e-78DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2S3HXR70.0A0A2S3HXR7_9POAL; Uncharacterized protein
STRINGPavir.Eb00572.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78863348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.13e-63MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]