PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E03917.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family RAV
Protein Properties Length: 372aa    MW: 39624.6 Da    PI: 10.2523
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E03917.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2422.3e-1373121155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+ykGV   + +grW A+I++      r +r++lg+f  +e Aa+a++ a+++++g
  Pahal.E03917.1  73 SRYKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDEEAAARAYDVAALRYRG 121
                     78****9888.8*********......44*************************98 PP
2B398.83.3e-31188285190
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 
                     f+k+ tpsdv+k++rlv+pk++ae+h       +  + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL++gD++vF+++   
  Pahal.E03917.1 188 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkrspEAATGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTIVFSHSTYg 282
                     89***************************98886667799**************************************************87554 PP

                     SEE CS
              B3  88 sef 90 
                      e+
  Pahal.E03917.1 283 PEK 285
                     444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.07E-1473129No hitNo description
PfamPF008471.6E-873121IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-1773129IPR016177DNA-binding domain
PROSITE profilePS5103221.85274129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-2174129IPR001471AP2/ERF domain
SMARTSM003804.6E-2374135IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.1E-38186297IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.02E-30186292IPR015300DNA-binding pseudobarrel domain
CDDcd100171.93E-29187279No hitNo description
SMARTSM010191.7E-22188294IPR003340B3 DNA binding domain
PfamPF023626.0E-28188280IPR003340B3 DNA binding domain
PROSITE profilePS5086314.17188295IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGIESTSPTA AEGSSASASS SSRSTGASTA TTVSGAAQQQ LAAAPTGGDE VSPADEQAVT  60
SQPSAAAVAQ GSSRYKGVVP QPNGRWGAQI YERHARVWLG TFPDEEAAAR AYDVAALRYR  120
GREAATNFPG AGASAPELAF LLAHSKAEIV DMLRKHTYAD ELRQGLRRGR GMGARAQPTP  180
AWARALLFEK AVTPSDVGKL NRLVVPKQHA EKHFPLKRSP EAATGKGVLL NFEDGEGKVW  240
RFRYSYWNSS QSYVLTKGWS RFVREKGLRA GDTIVFSHST YGPEKQLFID CKKTKTTAAT  300
DAAPAPVPAA ATAEKPKEAA RVVRLFGVDI AGDGCQKRAR PVEMAFEQGQ GFLKKQCVAH  360
HRSPALGAFL L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-4918730313125DNA-binding protein RAV1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0958120.0FP095812.1 Phyllostachys edulis cDNA clone: bphyem125h21, full insert sequence.
GenBankFP0968350.0FP096835.1 Phyllostachys edulis cDNA clone: bphyem207b07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814327.10.0AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ9AWS01e-153Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLA0A2S3HXM70.0A0A2S3HXM7_9POAL; Uncharacterized protein
STRINGPavir.Eb00702.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.23e-89related to ABI3/VP1 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]