PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E03758.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 349aa    MW: 37619.2 Da    PI: 6.7408
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E03758.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.7e-172572148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
   Pahal.E03758.1 25 RGPWTLEEDNLLMNYIACHGEGRWNLLARCSGLKRTGKSCRLRWLNYL 72
                     89********************************************97 PP
2Myb_DNA-binding53.65e-1778121146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   Pahal.E03758.1  78 RGNLTPEEQLLILELHSKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 121
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.8852072IPR017930Myb domain
SuperFamilySSF466896.36E-3122119IPR009057Homeodomain-like
SMARTSM007171.2E-132474IPR001005SANT/Myb domain
PfamPF002495.9E-152572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-232679IPR009057Homeodomain-like
CDDcd001673.23E-112772No hitNo description
PROSITE profilePS5129426.28173127IPR017930Myb domain
SMARTSM007171.5E-1577125IPR001005SANT/Myb domain
PfamPF002496.7E-1678121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-2480126IPR009057Homeodomain-like
CDDcd001678.89E-1382121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MSQRKGAMAA VTSSKHEEEM MELRRGPWTL EEDNLLMNYI ACHGEGRWNL LARCSGLKRT  60
GKSCRLRWLN YLKPDIKRGN LTPEEQLLIL ELHSKWGNRW SRIAQHLPGR TDNEIKNYWR  120
TRVQKQARQL RVDANSAVFR DAVRCYWMPR LLEKMAATSA HQVDPALLHP AHVATGLGSA  180
SPPVHGGQHD ATSAPGSGYG HHQSYPVDPS PSTSTSGSTS AAALPPVPCF SELSWVDQYG  240
PYADLDGPGA GAFDSAALGG LGLDGLDLGP ADGDVYPDST LLDYLNSACC TGGGAMMTMM  300
GGGNGAHSTC GAMDEYDGAY VPSSWRTDEL CQAAARKLGD HHQWGGGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-26221261104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794270.0HF679427.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB21 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814736.10.0transcription factor MYB2-like
SwissprotQ9C9G72e-79MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A2S3HXI20.0A0A2S3HXI2_9POAL; Uncharacterized protein
STRINGPavir.Ea00660.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.12e-80myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]