PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E03746.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

LBD

Protein Properties

Length: 291aa MW: 31289.4 Da PI: 7.6951

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E03746.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.9	4.4e-30	4	106	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C++ C+++p++ p++q +++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +PvyG+vg+++++++ql+q+ Pahal.E03746.1 4 SCNGCRVLRKGCSDTCAIRPCLqwirsPDAQGNATVFLAKFYGRAGLINLITAGPENVRPAIFRSLLYEACGRMLNPVYGSVGLLWSGNWQLCQS 98 6***********************99***************************************************************** PP DUF260 91 kaelallk 98 ++e +l++ Pahal.E03746.1 99 AVESVLRG 106 *9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	2.4E-92	1	287	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	16.303	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-23	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSDTCA IRPCLQWIRS PDAQGNATVF LAKFYGRAGL INLITAGPEN 60 VRPAIFRSLL YEACGRMLNP VYGSVGLLWS GNWQLCQSAV ESVLRGMPIA QPPPAATAVP 120 PLRTCDIRHV ARRQGQADQG AVAAAALHRM ANSSRGQFKR SGAHRSAAGC DSAIELVFSQ 180 PSAAMLVDVR QAQPLNWAPR QPSHEYSGSH DTVPETDSNA SVDTVEVSHV SQSEPEPPRE 240 SDERADGLDL TLGLSPTVHK TEPSDFDDVQ PCHRGEPVKL GLAMADSRVR *

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP100502	1e-150	FP100502.1 Phyllostachys edulis cDNA clone: bphyem111j02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818644.1	0.0	LOB domain-containing protein 42-like
TrEMBL	A0A2S3HXH9	0.0	A0A2S3HXH9_9POAL; Uncharacterized protein
STRING	Pavir.J11724.1.p	1e-176	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	3e-64	LOB domain-containing protein 41

Link Out ? help Back to Top
Phytozome	Pahal.E03746.1