PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E03738.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 329aa    MW: 35351.6 Da    PI: 4.5883
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E03738.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.48.3e-14114152346
             AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaa 46 
                     y+GVr +k +g+W+AeIr  +     + kr +lg+f+t  +Aa aa
  Pahal.E03738.1 114 YRGVRLRK-WGKWAAEIRNpF-----TgKRQWLGTFDT-AGAASAA 152
                     9*****99.**********55.....45**********.7777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.9E-14113162IPR016177DNA-binding domain
PfamPF008472.6E-8113153IPR001471AP2/ERF domain
PROSITE profilePS5103216.937113171IPR001471AP2/ERF domain
SMARTSM003802.2E-12113176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-18113164IPR001471AP2/ERF domain
PRINTSPR003677.7E-8114125IPR001471AP2/ERF domain
CDDcd000188.35E-16114145No hitNo description
PRINTSPR003677.7E-8136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAPLNHQQIL IKKALAKKPK CKRISGFGLK PSAALLKAKP QPQPPAPVQP RRRVRVLFED  60
PDATDSDSDD EEEAGTAKSK RFSFEMFVGK APAKPVLPAA TVAASTSGGT PESYRGVRLR  120
KWGKWAAEIR NPFTGKRQWL GTFDTAGAAS AAYLSASRSF AEEKRRRRGQ PVPASSPATS  180
ASTTPTASSS SSTSAAPFAH PSPSSVLEGT KPAPKPEESS EPVATPVLPS TESSQLPDDP  240
EFYQDLLRGL QLPDIDPMDF RAGLDALDVS DAPFCLDDEQ DLLFGDFADE EMDDLDLLDD  300
INDVFPELPG CDLGRGMDDF LQTVDFCV*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817249.10.0ethylene-responsive transcription factor ERF118-like
TrEMBLA0A2S3HXI40.0A0A2S3HXI4_9POAL; Uncharacterized protein
STRINGSi002186m1e-171(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129302528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.21e-11related to AP2 2