PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E03677.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 300aa MW: 31116.7 Da PI: 6.6777

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E03677.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27	7.9e-09	217	258	9	55
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR+ri +++ L++l+P+ +K++ +++LekA+ Y+k Lq Pahal.E03677.1 217 AKVRRERIAEKLKVLQDLVPNG-----TKVDLVTMLEKAITYVKFLQ 258 589***************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.322	208	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.3E-12	209	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-12	210	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.54E-11	210	262	No hit	No description
SMART	SM00353	2.5E-10	214	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.8E-6	218	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MAQASKRSSA MQPQLRPVMY DEEPSSMSLE LFGYHGGVVV DGDEGEGSAA AALSLQLAFD 60 DDSFKHGASA GGDYYGSWAG YGGSGASSSS SSSVLSFEQA GSGGHHHHHL GYGDDGCALW 120 MDAAAAGMVE HPPPQNGSAC RFGLVSPGSS ADDDAGGLRI QDLSSVQPPA KATNKRARPD 180 GEVHAAAAKK QCGGGGGRKS KAKAAPAPTK DPQSVAAKVR RERIAEKLKV LQDLVPNGTK 240 VDLVTMLEKA ITYVKFLQLQ VKVLAADEFW PAQGGKAPEL SQVKDALDAI LSSQQYPHK*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819067.1	0.0	transcription factor bHLH83-like
TrEMBL	A0A2S3HX40	0.0	A0A2S3HX40_9POAL; Uncharacterized protein
STRING	Pavir.Eb00817.1.p	1e-153	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1412	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37800.1	7e-47	RHD SIX-LIKE 1

Link Out ? help Back to Top
Phytozome	Pahal.E03677.1