PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E03554.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GeBP
Protein Properties Length: 410aa    MW: 43101.2 Da    PI: 4.7533
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E03554.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57398.65.7e-3187186297
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifels 92 
                     lfqrlw++e e+++L+G++df+a++g+   +++ d+  fye +++++sf+++ksql+eK+rrLKkK++ + ++ a++g  ++f+++h+  i++++
  Pahal.E03554.1  87 LFQRLWTDEEELLILRGFLDFTARRGTtfASHQyDTGPFYEEIRRRLSFDFTKSQLIEKLRRLKKKYRVCAARvAAQGAAFAFRSAHEGAIYDVA 181
                     79************************99877778*************************************998899****************** PP

          DUF573  93 kkiWg 97 
                     + iW+
  Pahal.E03554.1 182 RHIWR 186
                     ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.7E-2788185IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MAEVDDHHPL AAAASSSAGD DDEGTDTDAS NSDLANQQDP PTLTDATSAP PPTPAAAAAS  60
APEPSGAVPP PPPQTQGAGA AEDSRRLFQR LWTDEEELLI LRGFLDFTAR RGTTFASHQY  120
DTGPFYEEIR RRLSFDFTKS QLIEKLRRLK KKYRVCAARV AAQGAAFAFR SAHEGAIYDV  180
ARHIWRPAFR RGEGASAGDA SDEDDINPAA ALPNAMEDGG GGSAFAPTPR GRGGRRVRRR  240
TAQELEAPAL PSTSALMLND VAQEPLVVSV ENSAPAFAPP HPVQLPIVSP VVATPSPMPA  300
NGGGATEEVV RTILSPLLKE FISSVAAAGQ AGLGLGLGMG FGGIGGFDIL ALGFGTAGPN  360
PGMTGDEKWK QQQILELEVY LKRIELVREQ VTAALQELRS SEGPFTFGC*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0654060.0BT065406.1 Zea mays full-length cDNA clone ZM_BFb0145O21 mRNA, complete cds.
GenBankJX4284570.0JX428457.1 Zea mays subsp. mays clone pUT3052 GBP21 GeBP type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817348.10.0probable transcription factor At3g04930
TrEMBLA0A2S3HWT40.0A0A2S3HWT4_9POAL; Uncharacterized protein
STRINGSi005179m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.14e-39DNA-binding storekeeper protein-related transcriptional regulator