PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E03546.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 332aa MW: 36670.7 Da PI: 5.213 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104.2 | 1.7e-32 | 49 | 166 | 1 | 122 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF P+dee++++yL +k + + ++ evd +k+ePw+Lp+k+k +ekewyfF++ d+ky+tg+r+nrat+ gyWkatgkdke+++ Pahal.E03546.1 49 LPPGFRFYPNDEEIITFYLMPKNFTCT-----AMGEVDFNKSEPWELPNKAKLGEKEWYFFHQ-DRKYPTGTRANRATEGGYWKATGKDKEIYRD 137 79*****************99865544.....589*************99999********97.688**************************98 PP NAM 96 .....kgelvglkktLvfykgrapkgektdWv 122 el+g+k+tLv + +p dWv Pahal.E03546.1 138 vvgvaLPELIGMKTTLVSTRVGHPG---DDWV 166 765554455*******987655554...4565 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.14E-36 | 45 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.679 | 49 | 198 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-16 | 50 | 166 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MAQLERTSVQ WLVETYKTEK GEVGAPEPWE TTRSEQPKEI SGGGGSLELP PGFRFYPNDE 60 EIITFYLMPK NFTCTAMGEV DFNKSEPWEL PNKAKLGEKE WYFFHQDRKY PTGTRANRAT 120 EGGYWKATGK DKEIYRDVVG VALPELIGMK TTLVSTRVGH PGDDWVVCHV FHKTAGRKRT 180 PALPQYNLDT TGCGIGERST PMAMPLQFPM LPDFTMDPQV SYYSTTSAIS SLVSPMMPPM 240 PDMGGIGLQM NNTLFRNSKT IVPPMSYHQL GMGVASTDGF MAAPNSGPLS MVSQNGNGMN 300 PDQTNAIEIS SMVPAALEYV ANMDMGSIWK Y* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-31 | 47 | 179 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-31 | 47 | 179 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-31 | 47 | 179 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-31 | 47 | 179 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-31 | 47 | 179 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-31 | 47 | 179 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-31 | 47 | 179 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-31 | 47 | 179 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-31 | 47 | 179 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-31 | 47 | 179 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-31 | 47 | 179 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-31 | 47 | 179 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-31 | 47 | 179 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-31 | 47 | 179 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022682349.1 | 1e-113 | protein CUP-SHAPED COTYLEDON 1 | ||||
TrEMBL | A0A3L6R0D6 | 1e-177 | A0A3L6R0D6_PANMI; Protein CUP-SHAPED COTYLEDON 1-like | ||||
STRING | Pavir.Eb00976.1.p | 1e-154 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1452 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07680.2 | 9e-46 | NAC domain containing protein 80 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E03546.1 |