PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E03546.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 332aa    MW: 36670.7 Da    PI: 5.213
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E03546.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.21.7e-32491661122
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF P+dee++++yL +k  + +     ++ evd +k+ePw+Lp+k+k +ekewyfF++ d+ky+tg+r+nrat+ gyWkatgkdke+++ 
  Pahal.E03546.1  49 LPPGFRFYPNDEEIITFYLMPKNFTCT-----AMGEVDFNKSEPWELPNKAKLGEKEWYFFHQ-DRKYPTGTRANRATEGGYWKATGKDKEIYRD 137
                     79*****************99865544.....589*************99999********97.688**************************98 PP

             NAM  96 .....kgelvglkktLvfykgrapkgektdWv 122
                            el+g+k+tLv  +  +p     dWv
  Pahal.E03546.1 138 vvgvaLPELIGMKTTLVSTRVGHPG---DDWV 166
                     765554455*******987655554...4565 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.14E-3645173IPR003441NAC domain
PROSITE profilePS5100529.67949198IPR003441NAC domain
PfamPF023653.8E-1650166IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAQLERTSVQ WLVETYKTEK GEVGAPEPWE TTRSEQPKEI SGGGGSLELP PGFRFYPNDE  60
EIITFYLMPK NFTCTAMGEV DFNKSEPWEL PNKAKLGEKE WYFFHQDRKY PTGTRANRAT  120
EGGYWKATGK DKEIYRDVVG VALPELIGMK TTLVSTRVGH PGDDWVVCHV FHKTAGRKRT  180
PALPQYNLDT TGCGIGERST PMAMPLQFPM LPDFTMDPQV SYYSTTSAIS SLVSPMMPPM  240
PDMGGIGLQM NNTLFRNSKT IVPPMSYHQL GMGVASTDGF MAAPNSGPLS MVSQNGNGMN  300
PDQTNAIEIS SMVPAALEYV ANMDMGSIWK Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-314717915171NO APICAL MERISTEM PROTEIN
1ut4_B1e-314717915171NO APICAL MERISTEM PROTEIN
1ut7_A1e-314717915171NO APICAL MERISTEM PROTEIN
1ut7_B1e-314717915171NO APICAL MERISTEM PROTEIN
3swm_A1e-314717918174NAC domain-containing protein 19
3swm_B1e-314717918174NAC domain-containing protein 19
3swm_C1e-314717918174NAC domain-containing protein 19
3swm_D1e-314717918174NAC domain-containing protein 19
3swp_A1e-314717918174NAC domain-containing protein 19
3swp_B1e-314717918174NAC domain-containing protein 19
3swp_C1e-314717918174NAC domain-containing protein 19
3swp_D1e-314717918174NAC domain-containing protein 19
4dul_A1e-314717915171NAC domain-containing protein 19
4dul_B1e-314717915171NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682349.11e-113protein CUP-SHAPED COTYLEDON 1
TrEMBLA0A3L6R0D61e-177A0A3L6R0D6_PANMI; Protein CUP-SHAPED COTYLEDON 1-like
STRINGPavir.Eb00976.1.p1e-154(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.29e-46NAC domain containing protein 80