PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E03488.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 454aa    MW: 48520.6 Da    PI: 8.0199
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E03488.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.38.4e-114470127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C +++rtG C yG+rC+++H++
  Pahal.E03488.1 44 PGEADCAYYLRTGACGYGERCRYNHPR 70
                    57899********************96 PP
2zf-CCCH39.97.1e-1394120127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC ++a++GtCk+G++CkF H++
  Pahal.E03488.1  94 PGQPLCEYYAKNGTCKFGSNCKFDHPR 120
                     589**********************96 PP
3zf-CCCH37.15.2e-12139164227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tG+Ck+G++CkF+H++
  Pahal.E03488.1 139 GEKECSYYMKTGHCKFGGTCKFHHPE 164
                     6789********************96 PP
4zf-CCCH39.97.1e-13292318127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C ++++tGtCkyG+ Ck++H++
  Pahal.E03488.1 292 PGQPECEHYMKTGTCKYGAACKYHHPQ 318
                     5789*********************97 PP
5zf-CCCH331e-10340364327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +C ++a+ G+Ck+G++CkF H++
  Pahal.E03488.1 340 SQPCTYYAQHGFCKFGPTCKFDHPM 364
                     679********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.0424371IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-64370IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-84570IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-64772IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-54970IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.91593121IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-793120IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-1095120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-696121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-698121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.136137165IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5137164IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9139164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6140164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-4143163IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6291318IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859291319IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-10293318IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-5295318IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4297316IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-6337364IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178337365IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-8339364IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6339368IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-5341362IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MEPYAAAKGG GGGGDASTGL EESMRRLGLG GDGEAGDAKL PERPGEADCA YYLRTGACGY  60
GERCRYNHPR DRDRSAPVNG VERTAGAVEY PERPGQPLCE YYAKNGTCKF GSNCKFDHPR  120
EGGFVPVALN SSGFPLRQGE KECSYYMKTG HCKFGGTCKF HHPELGILSE TPTMYPPVQP  180
SPVSSPHPYP HLTNWQMGRP PVVPGSFLPG SYPPMMLPPT LMPMHGWNPY ISPMNQVAPA  240
GGQQTAQTGP PYGLSHQGPT SAFTYGSHYA QLYSSAGTSS SNIQEYALPE RPGQPECEHY  300
MKTGTCKYGA ACKYHHPQYF SGPKSNCALS PLGLPLRPGS QPCTYYAQHG FCKFGPTCKF  360
DHPMGTLNYS PSVSSLTDVP VAPYPLSFPV APMAPYPSST DLRPQYTLTK ESSANPPAVP  420
GTTYGPVGTI SKVYAPHTLI RPPNAAAAGM QAS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815660.10.0uncharacterized protein LOC112892755
SwissprotQ5NAV30.0C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A2S3HWN90.0A0A2S3HWN9_9POAL; Uncharacterized protein
STRINGPavir.Ea00915.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.39e-99C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]