PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E03447.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 227aa MW: 24133.2 Da PI: 8.573 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 81.4 | 1.5e-25 | 127 | 220 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY++YA+++GFs+r+ +++k+ n+ei+ + +Cs+eg+r+e+k+k ++++ + etr+gC+a++ vk+ +d+k+++t+++++HnH l Pahal.E03447.1 127 NFYKDYARDAGFSIRIGQQRKE--NEEIIAKYVYCSREGYRKERKTKivdqagKKRKPPSVLETRCGCEAHIYVKLGTDKKYRITSMVEHHNHGL 219 6*****************9998..999*******************99998655556668889******************************99 PP FAR1 90 a 90 + Pahal.E03447.1 220 V 220 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.1E-23 | 127 | 220 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MASASSFPAA SPTADGLAPS LGTVSPSPAA SFSIRGGASA SVRAIVCSAS CTPRPAAGSA 60 STPCAMDDAS HMPVAAIDDA SDVPVAAMDG TSDRLTVTNG LSYVRDVDSS SKPVIGMTFD 120 SIEDVQNFYK DYARDAGFSI RIGQQRKENE EIIAKYVYCS REGYRKERKT KIVDQAGKKR 180 KPPSVLETRC GCEAHIYVKL GTDKKYRITS MVEHHNHGLV SPNKRH* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814502.1 | 1e-118 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2T8KVS5 | 1e-110 | A0A2T8KVS5_9POAL; Uncharacterized protein | ||||
STRING | Sb01g028975.1 | 3e-47 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15006 | 9 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 8e-14 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E03447.1 |