PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E03436.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Dof
Protein Properties Length: 585aa    MW: 64210.7 Da    PI: 4.8457
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E03436.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.41.8e-39204263261
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                     ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k++
  Pahal.E03436.1 204 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKNA 263
                     7899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-31201261IPR003851Zinc finger, Dof-type
PfamPF027014.6E-32206262IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.891208262IPR003851Zinc finger, Dof-type
PROSITE patternPS013610210246IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MSDQKDPGIK LFGRVIPLAP EPALGTTETE EPHCHDRPPE ELQSRALEEE EDAAAADEDQ  60
HNEKEDGEMK VDMPQEKDNE MKVDTPQEKA DEMKIDTPQE KGNEMKVDMP QEKGTEMKFD  120
ASQKEQDGEM KVDAQQEKKD EQMKVDASPM TENIQPGTLP TSDHNKEDLG QVNSTEDKVA  180
SDPKGESEKT SNEESGQDKT LKKPDKILPC PRCNSMDTKF CYYNNYNVNQ PRHFCKNCQR  240
YWTAGGTMRN VPVGAGRRKS KNASLHYRQL LMAPDCMLGS RVDISKSVLP EALVSPPSAP  300
IQSTSRNETV LKFGPEVPLC ESMASALNID EQNVKNPGSA PRGENREDNS CASSVTSYNG  360
LPENMVHVDK NGAPVYCNGV APLPQYYLGT PFMYPWSVGW NNLPVMVPGK NMPEPASASE  420
SCSTSSAPWM TSPMMPASRL PRPAFPYPLV PPALWGCLSG WPATTWNIPW IRTNGCVSPS  480
SSSNSSCSGN GSPTLGKHSR DSNPLKEEKK EKSLWVPKTL RIDDPDEAAK SSIWATLGIK  540
PGDPGTFKPF QSKVESKGQK SDTAQVLQAN PAALSRSQSF QESS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2995600.0KF299560.1 Miscanthus sacchariflorus clone Msac_GC_7 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815271.10.0cyclic dof factor 2-like
TrEMBLA0A2S3HWJ80.0A0A2S3HWJ8_9POAL; Uncharacterized protein
STRINGPavir.Eb01078.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143438116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.23e-70cycling DOF factor 2