PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E03357.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 326aa    MW: 34685.4 Da    PI: 8.0877
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E03357.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.9e-1763108147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
   Pahal.E03357.1  63 RGHWRPAEDAKLKELVAQYGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 108
                      899*****************************.***********996 PP
2Myb_DNA-binding57.33.5e-18115159147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r ++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ +
   Pahal.E03357.1 115 RRAFSEEEEERLLAAHRAYGNK-WALIARLFP-GRTDNAVKNHWHVL 159
                      678*******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.47358109IPR017930Myb domain
SMARTSM007172.3E-1462111IPR001005SANT/Myb domain
SuperFamilySSF466895.19E-2863156IPR009057Homeodomain-like
PfamPF002494.2E-1663108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2664116IPR009057Homeodomain-like
CDDcd001679.28E-1466107No hitNo description
PROSITE profilePS5129427.25110164IPR017930Myb domain
SMARTSM007178.8E-16114162IPR001005SANT/Myb domain
PfamPF002493.8E-15115159IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-20117162IPR009057Homeodomain-like
CDDcd001677.19E-8126160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0071367Biological Processcellular response to brassinosteroid stimulus
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAHEMAAFFG AAPPRPPAAL APFREEQRHQ DAVEDVYHVD DVEDGGAGHG HGGSGGQGKL  60
CARGHWRPAE DAKLKELVAQ YGPQNWNLIA EKLDGRSGKS CRLRWFNQLD PRINRRAFSE  120
EEEERLLAAH RAYGNKWALI ARLFPGRTDN AVKNHWHVLM ARRQREQSGA LRRRKTSSSS  180
SSPGPAPPQH YAPVVVLHHH HYAGSHPLPF HAGGAGAHGV AAEAVSAPAA DTRAYSGGES  240
DESASTCTTD LSLGSAGAAV PCFYQSAYNG YDAAPRAAAP APAAAFAPSA RSAFSTPSAA  300
RHREAPPSDD KVALPFFDFL GVGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-33631634104C-Myb DNA-Binding Domain
1msf_C7e-33631634104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00516DAPTransfer from AT5G17800Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9648550.0EU964855.1 Zea mays clone 282116 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817647.10.0transcription factor CSA-like
SwissprotQ5NBM81e-100CSA_ORYSJ; Transcription factor CSA
TrEMBLA0A2S3HWA80.0A0A2S3HWA8_9POAL; Uncharacterized protein
STRINGPavir.J31094.1.p1e-141(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.15e-57myb domain protein 105
Publications ? help Back to Top
  1. Leonard LM,Follette VM
    Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications.
    Annu Rev Sex Res, 2002. 13: p. 346-88
    [PMID:12836736]
  2. Wang L,Li X,Chen Z
    Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities.
    Int. J. Biol. Macromol., 2009. 44(2): p. 211-4
    [PMID:19135473]
  3. Wang L,Huang H,Wei Y,Li X,Chen Z
    Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran.
    Int. J. Biol. Macromol., 2009. 45(4): p. 427-31
    [PMID:19549538]
  4. Zhang H, et al.
    Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development.
    Plant Cell, 2010. 22(3): p. 672-89
    [PMID:20305120]
  5. Zhang H, et al.
    Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81
    [PMID:23256151]
  6. Zhu X, et al.
    Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.
    Plant J., 2015. 82(4): p. 570-81
    [PMID:25754973]
  7. Li X, et al.
    Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.
    Plant Cell Environ., 2015. 38(10): p. 2171-92
    [PMID:25828772]
  8. Shaar-Moshe L,Hübner S,Peleg Z
    Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
    BMC Plant Biol., 2015. 15: p. 111
    [PMID:25935420]