PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E03355.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 320aa    MW: 34145.9 Da    PI: 8.4401
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E03355.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.7e-1863108147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+q+G+++W++Ia+++  gR++k+c++rw++ 
   Pahal.E03355.1  63 RGHWRPAEDAKLKELVAQHGPRNWNLIAEKLD-GRSGKSCRLRWFNQ 108
                      899*****************************.***********996 PP
2Myb_DNA-binding58.41.7e-18115158146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
   Pahal.E03355.1 115 RRAFTEEEEERLLAAHRAYGNR-WALIARLFP-GRTDNAVKNHWHV 158
                      678*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.57658109IPR017930Myb domain
SMARTSM007176.7E-1562111IPR001005SANT/Myb domain
SuperFamilySSF466892.81E-2863156IPR009057Homeodomain-like
PfamPF002498.2E-1763108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2764116IPR009057Homeodomain-like
CDDcd001672.03E-1466107No hitNo description
PROSITE profilePS5129427.222110164IPR017930Myb domain
SMARTSM007178.4E-16114162IPR001005SANT/Myb domain
PfamPF002491.8E-15115158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-20117161IPR009057Homeodomain-like
CDDcd001672.88E-8126159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MVREMACFSG CAPPAAALSP FHVEQEPAAV PEEVYHGHVE DPEEVSTGRG HGGSSGQGKL  60
CARGHWRPAE DAKLKELVAQ HGPRNWNLIA EKLDGRSGKS CRLRWFNQLD PRINRRAFTE  120
EEEERLLAAH RAYGNRWALI ARLFPGRTDN AVKNHWHVLA ARRQRERSGA IRRRKPSSSC  180
TTTTSSSHFA PAVAVAATVR SHYGSPPLPS HAGGAHAQHG IRTEAAATRA CSGGESEESA  240
STCTTDLSLG SAGATAAPCF HHSSNDGYDM APRAAAFAPG ARSAFSVPSP ARHRAAACDD  300
DSCGSLARHF YDFLGVGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-32611635107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161175RRQRERSGAIRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1074611e-137AK107461.1 Oryza sativa Japonica Group cDNA clone:002-129-A05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817646.10.0transcription factor CSA-like isoform X2
SwissprotQ5NBM83e-83CSA_ORYSJ; Transcription factor CSA
TrEMBLA0A2S3HWC90.0A0A2S3HWC9_9POAL; Uncharacterized protein
STRINGPavir.J16832.1.p1e-151(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-53myb domain protein 105
Publications ? help Back to Top
  1. Leonard LM,Follette VM
    Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications.
    Annu Rev Sex Res, 2002. 13: p. 346-88
    [PMID:12836736]
  2. Wang L,Li X,Chen Z
    Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities.
    Int. J. Biol. Macromol., 2009. 44(2): p. 211-4
    [PMID:19135473]
  3. Wang L,Huang H,Wei Y,Li X,Chen Z
    Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran.
    Int. J. Biol. Macromol., 2009. 45(4): p. 427-31
    [PMID:19549538]
  4. Zhang H, et al.
    Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development.
    Plant Cell, 2010. 22(3): p. 672-89
    [PMID:20305120]
  5. Zhang H, et al.
    Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81
    [PMID:23256151]
  6. Zhu X, et al.
    Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.
    Plant J., 2015. 82(4): p. 570-81
    [PMID:25754973]
  7. Li X, et al.
    Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.
    Plant Cell Environ., 2015. 38(10): p. 2171-92
    [PMID:25828772]
  8. Shaar-Moshe L,Hübner S,Peleg Z
    Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
    BMC Plant Biol., 2015. 15: p. 111
    [PMID:25935420]