PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E03324.4

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 446aa MW: 48258.7 Da PI: 8.2991

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E03324.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	106.7	1.3e-33	72	131	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++l+cprC+s+ntkfCy+nny+++qPr++C++C+ryWt GG+lrnvPvG rr+++ s Pahal.E03324.4 72 PDTILPCPRCNSMNTKFCYFNNYNVNQPRHYCRGCKRYWTDGGTLRNVPVGCKRRNRRPS 131 67899**********************************************999987755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-24	58	126	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.1E-29	74	129	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.018	76	130	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	78	114	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MGADSESGKA EGGLQAISSQ HEKMEADSKS EEAKNGLEAI NSEHEEMEAD SKSEEVKTDS 60 DGSGQEKVFK KPDTILPCPR CNSMNTKFCY FNNYNVNQPR HYCRGCKRYW TDGGTLRNVP 120 VGCKRRNRRP SNRHFAIQPY DYSIAANGYV AATSSSQSHA IKPYVLPGPS KENEAITTSG 180 SEMVLCKSIS PAPNTKEQKN NTRLVSLGSG DDKEEKSGLS SAVVSGSSDN SVPEKVGNYI 240 SGYRNGVKEP PPHTQSYAAA VTAYAQLSTD GTHGLVNSEV SPLSLLLSTM SDLGIRAPAV 300 PFPQPQVAPY WNRIPGWPNG AWSVPRPGSS VTTMPYLPQN SVARSGSSSL TLTLTLGKHP 360 REANSQEEEK AEKTFWVPKA LRITDPEEAA KSSIWASLGI KPDERLFCKC FQSKNPKNGK 420 TPESAQALQA NPAVFSSTQT FQGRT*

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MGADSESGKA EGGLQAISSQ HEKMEADSKS EEAKNGLEAI NSEHEEMEAD SKSEEVKTDS  60
DGSGQEKVFK KPDTILPCPR CNSMNTKFCY FNNYNVNQPR HYCRGCKRYW TDGGTLRNVP  120
VGCKRRNRRP SNRHFAIQPY DYSIAANGYV AATSSSQSHA IKPYVLPGPS KENEAITTSG  180
SEMVLCKSIS PAPNTKEQKN NTRLVSLGSG DDKEEKSGLS SAVVSGSSDN SVPEKVGNYI  240
SGYRNGVKEP PPHTQSYAAA VTAYAQLSTD GTHGLVNSEV SPLSLLLSTM SDLGIRAPAV  300
PFPQPQVAPY WNRIPGWPNG AWSVPRPGSS VTTMPYLPQN SVARSGSSSL TLTLTLGKHP  360
REANSQEEEK AEKTFWVPKA LRITDPEEAA KSSIWASLGI KPDERLFCKC FQSKNPKNGK  420
TPESAQALQA NPAVFSSTQT FQGRT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	128	RNVPVGCKRRNRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818008.1	0.0	cyclic dof factor 2-like
TrEMBL	A0A2S3HWD8	0.0	A0A2S3HWD8_9POAL; Uncharacterized protein
STRING	Pavir.Eb01147.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	4e-36	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Pahal.E03324.4