PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E03324.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 552aa MW: 58926.6 Da PI: 8.0919

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E03324.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	106.3	1.7e-33	178	237	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++l+cprC+s+ntkfCy+nny+++qPr++C++C+ryWt GG+lrnvPvG rr+++ s Pahal.E03324.1 178 PDTILPCPRCNSMNTKFCYFNNYNVNQPRHYCRGCKRYWTDGGTLRNVPVGCKRRNRRPS 237 67899**********************************************999987755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-24	164	232	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.5E-29	180	235	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.018	182	236	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	184	220	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence Send to blast
MPPAPLVPGE VTARTGAEIG ARAMAASGDP DRERHAAIQL FGLSVTAVDS ATVAAATEVS 60 TKLADDVRSN DGIACLPNKS LNVGASSFGS KNNKDGLQAI SSQHGKMGAD SESGKAEGGL 120 QAISSQHEKM EADSKSEEAK NGLEAINSEH EEMEADSKSE EVKTDSDGSG QEKVFKKPDT 180 ILPCPRCNSM NTKFCYFNNY NVNQPRHYCR GCKRYWTDGG TLRNVPVGCK RRNRRPSNRH 240 FAIQPYDYSI AANGYVAATS SSQSHAIKPY VLPGPSKENE AITTSGSEMV LCKSISPAPN 300 TKEQKNNTRL VSLGSGDDKE EKSGLSSAVV SGSSDNSVPE KVGNYISGYR NGVKEPPPHT 360 QSYAAAVTAY AQLSTDGTHG LVNSEVSPLS LLLSTMSDLG IRAPAVPFPQ PQVAPYWNRI 420 PGWPNGAWSV PRPGSSVTTM PYLPQNSVAR SGSSSLTLTL TLGKHPREAN SQEEEKAEKT 480 FWVPKALRIT DPEEAAKSSI WASLGIKPDE RLFCKCFQSK NPKNGKTPES AQALQANPAV 540 FSSTQTFQGR T*

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence Send to blast

MPPAPLVPGE VTARTGAEIG ARAMAASGDP DRERHAAIQL FGLSVTAVDS ATVAAATEVS  60
TKLADDVRSN DGIACLPNKS LNVGASSFGS KNNKDGLQAI SSQHGKMGAD SESGKAEGGL  120
QAISSQHEKM EADSKSEEAK NGLEAINSEH EEMEADSKSE EVKTDSDGSG QEKVFKKPDT  180
ILPCPRCNSM NTKFCYFNNY NVNQPRHYCR GCKRYWTDGG TLRNVPVGCK RRNRRPSNRH  240
FAIQPYDYSI AANGYVAATS SSQSHAIKPY VLPGPSKENE AITTSGSEMV LCKSISPAPN  300
TKEQKNNTRL VSLGSGDDKE EKSGLSSAVV SGSSDNSVPE KVGNYISGYR NGVKEPPPHT  360
QSYAAAVTAY AQLSTDGTHG LVNSEVSPLS LLLSTMSDLG IRAPAVPFPQ PQVAPYWNRI  420
PGWPNGAWSV PRPGSSVTTM PYLPQNSVAR SGSSSLTLTL TLGKHPREAN SQEEEKAEKT  480
FWVPKALRIT DPEEAAKSSI WASLGIKPDE RLFCKCFQSK NPKNGKTPES AQALQANPAV  540
FSSTQTFQGR T*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	222	234	RNVPVGCKRRNRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818008.1	0.0	cyclic dof factor 2-like
TrEMBL	A0A2S3HWD8	0.0	A0A2S3HWD8_9POAL; Uncharacterized protein
STRING	Pavir.Eb01147.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-35	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Pahal.E03324.1