PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E03259.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 618aa MW: 66256 Da PI: 6.5149

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E03259.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.5	7.8e-16	368	414	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k Lq Pahal.E03259.1 368 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 414 5***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.65E-17	361	418	No hit	No description
SuperFamily	SSF47459	1.83E-20	362	423	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.981	364	413	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-20	368	422	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-13	368	414	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-17	370	419	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009704	Biological Process	de-etiolation
GO:0009740	Biological Process	gibberellic acid mediated signaling pathway
GO:0010017	Biological Process	red or far-red light signaling pathway
GO:0031539	Biological Process	positive regulation of anthocyanin metabolic process
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 618 aa Download sequence Send to blast
MSDGNEFAEL LWENGQAVVH GRRKQPPQTS LPPFNCGAGS SSRAQEKQPG GDPVALLKTG 60 GVFGAGGLAP SFHDFSSGLD ASRDNGDLDD TVPWIHYPII EEDTAEPALA DSYSPDFFSE 120 LHAAAVAATN LGSLPPPVQH TTNNRSNPVA TTSREPEPSK EIHRLPIPGP ATRPEPQAEF 180 AATKQPRLGG GGEGLMNFSL FSRPAAMARA SLQNAQRPPQ TGTDKVSNVT TSTRVESTVL 240 QSASGPRTAP VFTEQRTAWS QQPREVRFSC TAAPTAGNLQ QEMPRDRLGS MTLQKKVETR 300 KAPEAAVATS SVCSGNGAGT GNDESWRQHK RKSQAECSAS QDDDLEDESG GMRRSGSRGT 360 KRSRTAEVHN LSERRRRDRI NEKMRALQEL IPNCNKIDKA SMLDEAIEYL KTLQLQVQMM 420 SMGSGLCIPP MLLPPTMQHL QIPPIAHFPH LGMGLGYGMG VFDMNSTPAV PFPSMPGAHF 480 PCPMIPGTPP QGLGMPVRNT VPMFGLPGQA IHPSASSVQP FPSLAGLPVR PNLPPQVSAA 540 MANMVQEQQQ DVATQQQQNM NNEARRGTNT GDPELQTIPQ VENQHFSVPS SAQTESGQFL 600 DSGNNRTDTA GRNGPET*

Sequence ? help Back to Top

Protein Sequence Length: 618 aa Download sequence Send to blast

MSDGNEFAEL LWENGQAVVH GRRKQPPQTS LPPFNCGAGS SSRAQEKQPG GDPVALLKTG  60
GVFGAGGLAP SFHDFSSGLD ASRDNGDLDD TVPWIHYPII EEDTAEPALA DSYSPDFFSE  120
LHAAAVAATN LGSLPPPVQH TTNNRSNPVA TTSREPEPSK EIHRLPIPGP ATRPEPQAEF  180
AATKQPRLGG GGEGLMNFSL FSRPAAMARA SLQNAQRPPQ TGTDKVSNVT TSTRVESTVL  240
QSASGPRTAP VFTEQRTAWS QQPREVRFSC TAAPTAGNLQ QEMPRDRLGS MTLQKKVETR  300
KAPEAAVATS SVCSGNGAGT GNDESWRQHK RKSQAECSAS QDDDLEDESG GMRRSGSRGT  360
KRSRTAEVHN LSERRRRDRI NEKMRALQEL IPNCNKIDKA SMLDEAIEYL KTLQLQVQMM  420
SMGSGLCIPP MLLPPTMQHL QIPPIAHFPH LGMGLGYGMG VFDMNSTPAV PFPSMPGAHF  480
PCPMIPGTPP QGLGMPVRNT VPMFGLPGQA IHPSASSVQP FPSLAGLPVR PNLPPQVSAA  540
MANMVQEQQQ DVATQQQQNM NNEARRGTNT GDPELQTIPQ VENQHFSVPS SAQTESGQFL  600
DSGNNRTDTA GRNGPET*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	372	377	ERRRRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269\|PubMed:17485859}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00081	ChIP-seq	Transfer from AT1G09530	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269\|PubMed:17485859}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025817917.1	0.0	transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like
Swissprot	Q0JNI9	0.0	PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBL	A0A2S3HW50	0.0	A0A2S3HW50_9POAL; Uncharacterized protein
STRING	Pavir.Ea01048.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3527	37	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	1e-44	phytochrome interacting factor 3

Link Out ? help Back to Top
Phytozome	Pahal.E03259.1

Publications ? help Back to Top
Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224]