PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E03219.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

SBP

Protein Properties

Length: 884aa MW: 98840.8 Da PI: 7.1427

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E03219.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	120.1	1e-37	127	204	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+gC+adls a++yh+rhkvCe+h++++vv ++++e+rfCqqCsrfh l+efDe+k+sCr+rLakhn rrrk q+ Pahal.E03219.2 127 CCQVDGCHADLSGARDYHKRHKVCEAHTRTSVVRIKNIEHRFCQQCSRFHLLQEFDEGKKSCRSRLAKHNGRRRKGQQ 204 6**************************************************************************887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.2E-31	120	189	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	30.804	125	202	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.15E-35	125	205	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.9E-29	128	201	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	3.7E-5	615	761	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	4.82E-7	617	760	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	6.10E-8	652	760	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 884 aa Download sequence Send to blast
MEAGFLWKEN GDQAGAARMS GGHKNKSLDW DLNDWRWDAN LFLATPAAAA PSECSSRELS 60 RVQGEIDFGV VVDKRRRLSP EEDGSAGCSN NSAVANGDNN HVVSVQRRQS SEEERPRKGA 120 SSSTPPCCQV DGCHADLSGA RDYHKRHKVC EAHTRTSVVR IKNIEHRFCQ QCSRFHLLQE 180 FDEGKKSCRS RLAKHNGRRR KGQQQGVADG NPTNENQSLS STLFLLLKQL SGLESGSSSE 240 QINHPNYLVN LLKNLAAIAS TQAYQDILKN ANSNPTSNAG NNAANGSTMH ELIIRSIPVG 300 SESLAEGPPV KKRVQDFDLN DACIEEVESR TDKIVFKLFG KEPKDFPVDL REQILNWLSH 360 CPTDMESYIR PGCVILTVYL RLPNWMWDEL DDDPVPWIEK LISMSNDGFW RTGWVYARIQ 420 ECLTLSYNGS LMLASPWQPV IGDRLQRLCV TPIAVDCSST AKFCVRGFNI VQPTTKLLCV 480 FGGKYLIQEE TQMLPEGTTM QQGPQCLTFS CSFPSTSGRG FIEVEDYDQS SLSVPFVVSD 540 KDVCSEIRML EHELNLSSFD ETSERIGDLM ASRSRALHFL QEIGWLLQRS HMQATSEQRQ 600 YCTDGFSVAR FRWLLSFAID QEWCAVVKKL LNTMFQGDID LDVPSPVEFA LGENLLVSAV 660 NKRSKPLVQF LLRYRTRNYA PDSGAIDPVQ FLFTPDMTGP SNITPLHIAA TISDSTSVLD 720 ALTDDPQQLG IKAWKNARDD TGFTPEDYAQ KRGHISYIQM VQDKIDRRLP KAHVSVAIPS 780 RASAPDTVRK HGSQLKSTDQ TTFNVEKSPQ SISQPLSCRQ CVHQDHQLAY RPRTNRFFST 840 RPAMLSLVAI AAVCVCVGLI MKSPPHVSSM KPFLWEKIRW GPN*

Sequence ? help Back to Top

Protein Sequence Length: 884 aa Download sequence Send to blast

MEAGFLWKEN GDQAGAARMS GGHKNKSLDW DLNDWRWDAN LFLATPAAAA PSECSSRELS  60
RVQGEIDFGV VVDKRRRLSP EEDGSAGCSN NSAVANGDNN HVVSVQRRQS SEEERPRKGA  120
SSSTPPCCQV DGCHADLSGA RDYHKRHKVC EAHTRTSVVR IKNIEHRFCQ QCSRFHLLQE  180
FDEGKKSCRS RLAKHNGRRR KGQQQGVADG NPTNENQSLS STLFLLLKQL SGLESGSSSE  240
QINHPNYLVN LLKNLAAIAS TQAYQDILKN ANSNPTSNAG NNAANGSTMH ELIIRSIPVG  300
SESLAEGPPV KKRVQDFDLN DACIEEVESR TDKIVFKLFG KEPKDFPVDL REQILNWLSH  360
CPTDMESYIR PGCVILTVYL RLPNWMWDEL DDDPVPWIEK LISMSNDGFW RTGWVYARIQ  420
ECLTLSYNGS LMLASPWQPV IGDRLQRLCV TPIAVDCSST AKFCVRGFNI VQPTTKLLCV  480
FGGKYLIQEE TQMLPEGTTM QQGPQCLTFS CSFPSTSGRG FIEVEDYDQS SLSVPFVVSD  540
KDVCSEIRML EHELNLSSFD ETSERIGDLM ASRSRALHFL QEIGWLLQRS HMQATSEQRQ  600
YCTDGFSVAR FRWLLSFAID QEWCAVVKKL LNTMFQGDID LDVPSPVEFA LGENLLVSAV  660
NKRSKPLVQF LLRYRTRNYA PDSGAIDPVQ FLFTPDMTGP SNITPLHIAA TISDSTSVLD  720
ALTDDPQQLG IKAWKNARDD TGFTPEDYAQ KRGHISYIQM VQDKIDRRLP KAHVSVAIPS  780
RASAPDTVRK HGSQLKSTDQ TTFNVEKSPQ SISQPLSCRQ CVHQDHQLAY RPRTNRFFST  840
RPAMLSLVAI AAVCVCVGLI MKSPPHVSSM KPFLWEKIRW GPN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-25	120	201	3	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	73	77	KRRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819590.1	0.0	squamosa promoter-binding-like protein 1 isoform X1
Refseq	XP_025819591.1	0.0	squamosa promoter-binding-like protein 1 isoform X1
Swissprot	Q9LGU7	0.0	SPL1_ORYSJ; Squamosa promoter-binding-like protein 1
TrEMBL	A0A2S3HWL1	0.0	A0A2S3HWL1_9POAL; Uncharacterized protein
STRING	Pavir.Ea01625.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	1e-141	squamosa promoter-binding protein-like 12

Link Out ? help Back to Top
Phytozome	Pahal.E03219.2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang H,Zhai J,Mo J,Li D,Song F Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance. J Integr Plant Biol, 2012. 54(9): p. 652-62 [PMID:22889013] Zhang H, et al. Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response. Plant Cell Rep., 2014. 33(10): p. 1745-56 [PMID:25113543]