 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pahal.E03217.2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
bHLH |
| Protein Properties |
Length: 352aa MW: 38462.6 Da PI: 6.7059 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.E03217.2 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 23 | 1.5e-07 | 163 | 205 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+ E++RR r+ +++ L l+P++ +K + a++ A+eYI++L
Pahal.E03217.2 163 KKEKQRRLRLTEKYTALMLLIPNR-----TKDDRATVISDAIEYIHEL 205
57*********************9.....9***************988 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 352 aa
Download sequence Send
to blast |
MYHPQCELLM AHETRDLDAG QPHLTASAGV ATISTELSFH LLHSLDAAAA VSAVTPQPTI 60
DYFFGGAADP HQPAVQYEPL PPTQHTMNML RDYCNGHYTT AEPYLRGART GALVFGATDD 120
ESAAYMPGPF ESSPPPRATG GRKRSRALLG GGFHGGPANG VEKKEKQRRL RLTEKYTALM 180
LLIPNRTKDD RATVISDAIE YIHELGRTVE ELTLLVEKKR RRMELQGDVV DAVVVPAGEA 240
ESSEGEVAPP VPAAQLQPIR STYIQRRSKD TTVDVRIVEE DVNIKLTKRR RDGCLAAASR 300
ALDDLRLDLV HLSGGKIGDC HIYMFNTKIH KSFPVFASAV ASRLMEVVDE S*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds to the E-box-containing promoter regions of the transcription factors TDR and EAT1, activating their expression. May have a role in specifying the cell pattern of the inner anther walls and functioning in meiosis progression. Required for male reproduction (PubMed:24755456). Acts downstream of UDT1 and GAMYB, but upstream of TDR1 and EAT1 in pollen development (PubMed:24894043). {ECO:0000269|PubMed:24755456, ECO:0000269|PubMed:24894043}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT064392 | 0.0 | BT064392.1 Zea mays full-length cDNA clone ZM_BFc0164O20 mRNA, complete cds. |
| GenBank | BT064573 | 0.0 | BT064573.1 Zea mays full-length cDNA clone ZM_BFc0184C05 mRNA, complete cds. |
| GenBank | BT068906 | 0.0 | BT068906.1 Zea mays full-length cDNA clone ZM_BFc0190J24 mRNA, complete cds. |
